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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MQIGFNFTLTGTLDMVQQMIKERKIDYVEMLIDNFVHLPPEQIADSFDCPVAFHIMLSKYLERDREALAALGKRLRRFID
VMRPVYVSDHILYFTHNGRSLFHLGEIDYGEYDHVRSKVEQWQDMLGTRLYLENYPSIMDGAWDAPSFYERLSRETGVGV
LFDASNAICAQNNTGAPVELWKKIIETTRHFHVAGYGTAFIEPRVKADTSDREMAEDTLDFLSRMRTSFDKPGATITYER
DFDIDYESISVDLKRLRDIFPCV

The query sequence (length=263) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7tcr:A 263 263 0.9962 0.9962 0.9962 0.0 7tcr:B, 7tcu:A, 7tcu:B, 7tcw:A, 7tcw:B, 7tcx:A, 7tcx:B
2 7fc0:E 264 262 0.5437 0.5417 0.5458 4.92e-108 7fc0:B
3 7dz9:B 260 260 0.3498 0.3538 0.3538 2.44e-48 7dz9:A
4 2b4f:A 404 108 0.0989 0.0644 0.2407 3.5 1h12:A, 1xwq:A
5 7ch1:A 640 30 0.0494 0.0203 0.4333 4.1 7ch1:B
6 8ips:B 588 46 0.0608 0.0272 0.3478 7.2 8ipt:A, 8ipt:E, 7zda:D, 7zdb:D, 7zdc:D, 7zde:D, 7zdf:D, 7zdg:D, 7zdk:D, 7zdl:D, 7zdr:D, 7zdt:D, 7zdu:D, 7zdv:D, 7zdw:D, 7ze5:D, 7zec:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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