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BioLiP
>protein
MQGFGVHTSMWTMNWDRPGAERAVAAALKYEVDFIEIPMLNPPAVDTEHTRALLEKNELRALCSLGLPERAWASVRPDAA
IEHLKVAIDKTADLGGEALSGVIYGGIGERTGVPPTEAEYDNIARVLSAAAKHAKSRGIELGVEAVNRYENHLINTGWQA
VQMIERVGADNIFVHLDTYHMNIEEKGVGNGILDAREHLKYIHLSESDRGTPGYGTCGWDEIFSTLAAIGFKGGLAMESF
INMPPEVAYGLAVWRPVAKDEEEVMGNGLPFLRNKAKQYGLI

The query sequence (length=282) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7dz4:C 286 282 1.0000 0.9860 1.0000 0.0 7dz2:A, 7dz2:B, 7dz2:C, 7dz2:D, 7dz3:A, 7dz3:B, 7dz3:C, 7dz3:D, 7dz4:A, 7dz4:B, 7dz4:D, 7dz5:A, 7dz5:B, 7dz5:C, 7dz5:D, 7dz6:A, 7dz6:B, 7dz6:C, 7dz6:D
2 7ern:C 284 279 0.6277 0.6232 0.6344 5.58e-138 7erm:A, 7erm:B, 7erm:C, 7erm:D, 7ern:A, 7ern:B, 7ern:D, 7ero:A, 7ero:B, 7ero:C, 7ero:D
3 7cj5:A 292 279 0.3582 0.3459 0.3620 3.88e-55 7cj4:A, 7cj4:B, 7cj5:B, 7cj6:A, 7cj6:B, 7cj7:A, 7cj7:B, 7cj8:A, 7cj8:B, 7cj8:C, 7cj8:D, 7cj8:E, 7cj8:F, 7cj9:A, 7cj9:B, 7cj9:C, 7cj9:D, 7cj9:E, 7cj9:F, 7cj9:G, 7cj9:H
4 5zfs:B 294 277 0.3404 0.3265 0.3466 8.45e-50 5zfs:A
5 3vyl:A 297 290 0.3546 0.3367 0.3448 7.59e-45 3vyl:B, 3vyl:C, 3vyl:D, 3vyl:E, 3vyl:F, 3vyl:G, 3vyl:H
6 4pfh:A 298 296 0.3156 0.2987 0.3007 3.99e-29 5j8l:A, 5j8l:B, 5j8l:C, 5j8l:D, 2ou4:A, 2ou4:B, 2ou4:C, 2ou4:D, 4pfh:B, 4pgl:A, 4pgl:B, 4pgl:C, 4pgl:D, 4q7i:A, 4q7i:B, 2qul:A, 2qul:B, 2qul:C, 2qul:D, 2qum:A, 2qum:B, 2qum:C, 2qum:D, 2qun:A, 2qun:B, 2qun:C, 2qun:D, 4xsl:A, 4xsl:B, 4xsl:C, 4xsl:D, 4xsm:A, 4xsm:B, 4xsm:C, 4xsm:D, 4ytq:A, 4ytq:B, 4ytq:C, 4ytq:D, 4ytr:A, 4ytr:B, 4ytr:C, 4ytr:D, 4yts:A, 4yts:B, 4yts:C, 4yts:D, 4ytt:A, 4ytt:B, 4ytt:C, 4ytt:D, 4ytu:A, 4ytu:B, 4ytu:C, 4ytu:D
7 3vnl:A 291 135 0.1915 0.1856 0.4000 1.05e-28 7e9w:A, 7e9w:B, 7e9w:C, 7e9w:D, 3vni:A, 3vni:B, 3vni:C, 3vni:D, 3vnj:A, 3vnj:B, 3vnj:C, 3vnj:D, 3vnk:A, 3vnk:B, 3vnk:C, 3vnk:D, 3vnl:B, 3vnl:C, 3vnl:D, 3vnm:A, 3vnm:B, 3vnm:C, 3vnm:D
8 7x7w:A 288 263 0.2908 0.2847 0.3118 4.35e-27 7x7w:B
9 2hk1:A 289 153 0.2021 0.1972 0.3725 4.79e-25 2hk1:B, 2hk1:C, 2hk1:D
10 5h1w:A 270 217 0.2234 0.2333 0.2903 7.57e-17 5b7y:A, 5b7y:B, 5b80:A, 5b80:B, 5h1w:B, 5h6h:A, 5h6h:B
11 6wn6:B 264 126 0.1454 0.1553 0.3254 1.13e-12 6wn6:A, 6wn6:C, 6wn6:D
12 2qw5:A 327 182 0.1525 0.1315 0.2363 2.27e-07 2qw5:B
13 1k77:A 260 122 0.1241 0.1346 0.2869 1.54e-06
14 1i6n:A 278 126 0.1277 0.1295 0.2857 9.48e-06
15 3ngf:B 260 242 0.2234 0.2423 0.2603 2.38e-05 3ngf:A
16 3ju2:A 275 197 0.1844 0.1891 0.2640 1.94e-04 3qc0:A
17 3tva:A 282 158 0.1454 0.1454 0.2595 0.002 3tva:B
18 3kws:A 265 135 0.1028 0.1094 0.2148 0.098 3kws:B
19 5hmq:D 624 123 0.1028 0.0465 0.2358 0.23 5hmq:A, 5hmq:B, 5hmq:C, 5hmq:E, 5hmq:F
20 3wqo:A 271 128 0.0993 0.1033 0.2188 0.33 3wqo:B
21 8tcd:D 272 126 0.1099 0.1140 0.2460 0.62 8tcd:B, 8tcd:C, 8tcd:A, 8tcr:C, 8tcr:B, 8tcr:A, 8tcr:D, 8tcs:D, 8tcs:C, 8tcs:A, 8tcs:B
22 1a0c:A 437 60 0.0780 0.0503 0.3667 0.69 1a0c:B, 1a0c:C, 1a0c:D
23 7q3a:B 340 44 0.0567 0.0471 0.3636 1.2 7q3a:A
24 7zus:CCC 650 153 0.1135 0.0492 0.2092 1.5 8e23:A, 8e24:A, 8e24:D, 8gd7:A, 4x0p:A, 4x0p:B, 4x0p:C, 4x0p:D, 4x0q:A, 4x0q:B, 7zus:AAA, 7zus:BBB, 7zx0:AAA, 7zx0:BBB, 7zx0:CCC, 7zx0:DDD, 7zx0:EEE, 7zx0:FFF, 7zx1:AAA, 7zx1:BBB, 7zx1:CCC, 7zx1:DDD, 7zx1:EEE, 7zx1:FFF
25 7qqg:D 496 53 0.0603 0.0343 0.3208 1.7
26 4xkm:A 435 76 0.0887 0.0575 0.3289 1.9 4xkm:B, 4xkm:C, 4xkm:D, 4xkm:E, 4xkm:F, 4xkm:G, 4xkm:H
27 6xbu:A 605 124 0.1028 0.0479 0.2339 2.0
28 7qqg:B 623 53 0.0603 0.0273 0.3208 2.2 7qqg:A, 7qqg:C, 7qqh:A, 7qqh:B, 7qqh:C, 7qqh:D
29 6zu5:SH0 156 37 0.0461 0.0833 0.3514 2.9
30 4v59:D 1467 59 0.0674 0.0130 0.3220 3.4 4v59:A, 4v59:B, 4v59:C, 4v59:E, 4v59:F
31 2mok:A 176 23 0.0390 0.0625 0.4783 4.7 1ag9:A, 1ag9:B, 1ahn:A
32 6ql9:D 1765 59 0.0674 0.0108 0.3220 6.8 3hmj:A, 3hmj:B, 3hmj:C, 8prv:A, 8prv:B, 8prw:A, 8prw:B, 8prw:C, 8prw:D, 8prw:E, 8prw:F, 8ps1:A, 6ql6:F, 6ql6:E, 6ql6:D, 6ql6:C, 6ql6:B, 6ql6:A, 6ql9:F, 6ql9:A, 6ql9:E, 6ql9:B, 6ql9:C, 6ta1:A, 6ta1:B, 6ta1:D, 6ta1:K, 6ta1:F, 6ta1:I, 6u5u:A, 2vkz:A, 2vkz:B, 2vkz:C, 2wat:A, 2wat:B, 2wat:C, 2wat:D, 2wat:E, 2wat:F
33 6njo:D 413 45 0.0567 0.0387 0.3556 6.8 6njo:B, 6njo:A, 6njo:C, 6njo:E, 6njp:B, 6njp:C, 6njp:D, 6njp:E, 2obl:A, 2obm:A
34 6wev:AbA 817 46 0.0567 0.0196 0.3478 8.0 8ghr:A, 8ghr:B, 6wet:AaA, 6wet:BaB, 6weu:AbA, 6weu:BbB, 6wev:BbB, 6wew:AbA, 6wew:BaB, 6wfj:AcA, 6wfj:BcB
35 4q6r:B 444 140 0.1028 0.0653 0.2071 8.2 4q6r:A
36 6ouv:A 595 98 0.1028 0.0487 0.2959 8.4 2o1x:A, 2o1x:B, 6ouv:B, 8v9i:A, 8v9i:B
37 6xxg:AAA 560 98 0.1028 0.0518 0.2959 8.5 6ouw:A
38 6xxg:BBB 539 98 0.1028 0.0538 0.2959 9.3 2o1x:C, 2o1x:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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