Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MQGEIIAGFLAPHPPHLVYGENPPQNEPRSQGGWEVLRWAYERARERLDAMKPDVLLVHSPHWITSVGHHFLGVPELSGK
SVDPIFPNVFRYDFSLNVDVELAEACAEEGRKAGLVTKMMRNPKFRVDYGTITTLHLIRPQWDIPVVGISANNSPYYLNT
KEGMSEMDVLGKATREAIRKTGRKAVLLASNTLSHWHFHEEPTIPEDMSKEYPATMAGYQWDIRMIELMRQGKTSEVFKL
LPQFIDEAFAEVKSGAFTWMHAAMQYPELAAELFGYGTVIGTGNAVMEWDLRKAGLSML

The query sequence (length=299) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vsh:D 304 299 1.0000 0.9836 1.0000 0.0 3vsh:B, 3vsi:B, 3vsi:D, 3vsj:B, 3vsj:D
2 8ihg:A 300 296 0.7960 0.7933 0.8041 0.0 8ihg:C
3 7txy:F 293 286 0.5585 0.5700 0.5839 3.10e-127 7txy:B, 7txy:D, 7txy:H
4 8in2:A 263 114 0.1037 0.1179 0.2719 0.072 8in2:B
5 2c44:C 468 145 0.1104 0.0705 0.2276 0.38 2c44:A, 2c44:D, 2c44:B, 5d8g:A
6 2g28:B 801 59 0.0635 0.0237 0.3220 0.46 2g28:A, 2iea:A, 2iea:B, 1l8a:B, 1l8a:A, 3lpl:A, 3lpl:B, 3lq2:A, 3lq2:B, 3lq4:A, 3lq4:B, 2qta:A, 2qta:B, 2qtc:A, 2qtc:B, 1rp7:A, 1rp7:B
7 2g25:B 831 59 0.0635 0.0229 0.3220 0.47 2g25:A
8 2vn4:A 599 234 0.1605 0.0801 0.2051 1.1 2vn7:A
9 3pl1:A 185 41 0.0535 0.0865 0.3902 1.5
10 2qmm:A 195 33 0.0435 0.0667 0.3939 3.3 2qmm:B
11 8abs:A 394 62 0.0635 0.0482 0.3065 3.9 8abr:A, 5ofq:A, 5ofq:B, 5ofq:C, 5ofq:D
12 4w1y:B 433 101 0.0903 0.0624 0.2673 6.8
13 3j9z:SE 166 44 0.0468 0.0843 0.3182 8.6 4a2i:E, 8a3l:E, 7abz:j, 7ac7:j, 7acj:j, 7acr:j, 4adv:E, 5afi:e, 7afi:E, 7afl:E, 7afo:E, 8akn:F, 8am9:F, 6awb:H, 6awc:H, 6awd:H, 9ax7:E, 9ax8:e, 8aye:E, 8b0x:E, 7b5k:e, 8b7y:G, 8bf7:i, 8bge:i, 8bgh:i, 8bh4:i, 8bhj:i, 8bhl:i, 8bhn:i, 8bhp:i, 8bil:i, 8bim:i, 7bod:E, 7boe:E, 7bof:E, 7bog:E, 7boh:E, 7boi:E, 6bu8:E, 6by1:AE, 6by1:BE, 6c4i:e, 8ca7:E, 8cai:E, 8cep:E, 8cf1:E, 8cgj:E, 8cgr:E, 8cgu:E, 9cg5:E, 9cg6:E, 9cg7:E, 7cpj:e, 7d6z:l, 7d80:F, 6dnc:RA, 8eiu:E, 8ekc:e, 8emm:E, 6enf:e, 6enj:e, 6enu:e, 8eyq:E, 8eyt:E, 9fbv:E, 8fiz:AP, 8fto:E, 8fzd:e, 8fze:e, 8fzf:e, 8fzg:e, 8fzh:e, 8fzi:e, 8fzj:e, 8g2u:d, 8g31:d, 8g34:d, 8g38:d, 8g6w:E, 8g7p:e, 8g7q:e, 8g7r:e, 8g7s:e, 8ghu:e, 6gwt:e, 6gxm:e, 6gxn:e, 6gxo:e, 6gxp:e, 6h4n:e, 5h5u:l, 6h58:e, 6h58:ee, 6hrm:j, 8hsp:E, 8htz:E, 8hu1:E, 6i7v:AE, 6i7v:BE, 8ifb:E, 8ifc:E, 5iqr:j, 5it8:AE, 5it8:BE, 5j5b:AE, 5j5b:BE, 5j7l:AE, 5j7l:BE, 5j88:AE, 5j88:BE, 5j8a:AE, 5j8a:BE, 3j9y:e, 5j91:AE, 5j91:BE, 3ja1:SE, 3jbu:E, 3jbv:E, 3jcd:e, 3jce:e, 3jcj:k, 3jcn:f, 5jc9:AE, 5jc9:BE, 7jss:J, 7jsw:J, 7jsz:J, 8jsg:k, 8jsh:k, 5jte:AE, 7jt1:J, 7jt2:J, 7jt3:J, 5ju8:AE, 7k00:E, 8k3o:E, 8k4e:E, 7k50:J, 7k51:J, 7k52:J, 7k53:J, 7k54:J, 7k55:J, 5kcr:1e, 5kcs:1e, 5kps:10, 5kpv:9, 5kpw:9, 5kpx:9, 5l3p:e, 6lkq:D, 7lv0:J, 5lza:e, 5lzb:e, 5lzc:e, 5lzd:e, 5lze:e, 5lzf:e, 7m5d:j, 5mdv:j, 5mdw:j, 5mdy:j, 5mdz:j, 5me0:E, 5me1:E, 5mgp:e, 5my1:E, 7n1p:SE, 7n2c:SE, 7n2u:SE, 7n2v:SE, 7n30:SE, 7n31:SE, 7nar:E, 7nas:E, 7nat:E, 7nau:E, 7nav:E, 7nax:E, 7nbu:E, 5no2:E, 5no3:E, 5no4:E, 5np6:H, 6nqb:E, 7nso:e, 7nsp:e, 7nsq:e, 5nwy:4, 7nwt:j, 7nww:i, 7o19:AE, 7o1a:AE, 7o1c:AE, 5o2r:e, 7o5h:E, 6o7k:k, 6o9j:e, 6o9k:e, 7oe0:E, 7oe1:E, 6ofx:J, 6og7:J, 6ogf:J, 6ogg:J, 6ogi:J, 7oif:i, 7oig:i, 7oii:i, 7oiz:E, 7oj0:E, 6om6:j, 6ore:j, 6orl:j, 6osk:j, 6osq:j, 6ost:j, 6ot3:j, 7ot5:i, 7otc:e, 6ouo:j, 8p16:j, 8p17:j, 8p18:j, 7p3k:E, 8peg:E, 8phj:E, 7pjs:e, 7pjt:e, 7pju:e, 7pjv:e, 7pjw:e, 7pjx:e, 7pjy:e, 7pjz:e, 8pkl:E, 8pva:E, 7q4k:AE, 8q4f:E, 6q97:j, 6q98:j, 6q9a:j, 8qbt:m, 7qg8:4, 7qgh:4, 7qgn:4, 7qgr:4, 8qk7:j, 8qoa:E, 8r3v:E1, 8r3v:E2, 8r6c:E, 8r8m:E, 8rcl:E1, 8rcl:E2, 8rcm:E1, 8rcm:E2, 8rcs:E1, 8rcs:E2, 8rct:E1, 8rct:E2, 7s1g:G, 7s1h:G, 7s1i:G, 7s1j:G, 7s1k:G, 7sa4:j, 7ss9:J, 7ssd:J, 7ssl:J, 7ssn:J, 7sso:J, 7ssw:J, 7st2:J, 7st6:J, 7st7:J, 8syl:e, 6szs:e, 8t5d:d, 8t5h:d, 6tbv:S051, 6tc3:S051, 7tos:S05, 4u1u:AE, 4u1u:CE, 4u1v:AE, 4u1v:CE, 4u20:AE, 4u20:CE, 4u24:AE, 4u24:CE, 4u25:AE, 4u25:CE, 4u26:AE, 4u26:CE, 4u27:AE, 4u27:CE, 5u4i:e, 5u4j:e, 5u9f:E, 5u9g:E, 7ug7:SE, 7uph:Z, 8upo:K, 8upr:K, 8uql:K, 8uqm:K, 8uqp:K, 8ur0:K, 8urh:K, 8uri:K, 8urx:K, 8ury:K, 5uyk:E, 5uyl:E, 5uym:E, 5uyn:E, 5uyp:E, 5uyq:E, 5uz4:E, 4v4h:AE, 4v4h:CE, 4v4q:AE, 4v4q:CE, 4v4v:AE, 4v4w:AE, 4v50:AE, 4v50:CE, 4v52:AE, 4v52:CE, 4v53:AE, 4v53:CE, 4v54:AE, 4v54:CE, 4v55:AE, 4v55:CE, 4v56:AE, 4v56:CE, 4v57:AE, 4v57:CE, 4v5b:BE, 4v5b:DE, 4v5h:AE, 4v5y:AE, 4v5y:CE, 4v64:AE, 4v64:CE, 4v65:AS, 4v66:AS, 4v69:AE, 4v6c:AE, 4v6c:CE, 4v6d:AE, 4v6d:CE, 4v6e:AE, 4v6e:CE, 4v6k:BI, 4v6l:AI, 4v6m:AE, 4v6n:BH, 4v6o:AH, 4v6p:AH, 4v6q:AH, 4v6r:AH, 4v6s:BG, 4v6t:AE, 4v6v:AE, 4v6y:AE, 4v6z:AE, 4v70:AE, 4v71:AE, 4v72:AE, 4v73:AE, 4v74:AE, 4v75:AE, 4v76:AE, 4v77:AE, 4v78:AE, 4v79:AE, 4v7a:AE, 4v7b:AE, 4v7c:AE, 4v7d:BE, 4v7i:BE, 4v7s:AE, 4v7s:CE, 4v7t:AE, 4v7t:CE, 4v7u:AE, 4v7u:CE, 4v7v:AE, 4v7v:CE, 4v85:AE, 4v89:AE, 4v9c:AE, 4v9c:CE, 4v9d:AE, 4v9d:BE, 4v9o:BE, 4v9o:DE, 4v9o:FE, 4v9o:HE, 4v9p:BE, 4v9p:DE, 4v9p:FE, 4v9p:HE, 8vs9:S05, 8vsa:S05, 6vu3:K, 6vwl:d, 6vwm:d, 6vwn:d, 6vyq:K, 6vyr:K, 6vys:K, 6vyt:K, 6vyu:K, 6vyw:K, 6vyx:K, 6vyy:K, 6vyz:K, 6vz2:K, 6vz3:K, 6vz5:K, 6vz7:K, 6vzj:K, 6w6k:E, 6w77:E, 6w7m:E, 6w7n:E, 6w7w:D, 5wdt:e, 6wd0:J, 6wd1:J, 6wd2:J, 6wd3:J, 6wd4:J, 6wd5:J, 6wd6:J, 6wd7:J, 6wd8:J, 6wd9:J, 6wda:J, 6wdb:J, 6wdc:J, 6wdd:J, 6wde:J, 6wdf:J, 6wdg:J, 6wdh:J, 6wdi:J, 6wdj:J, 6wdk:J, 6wdl:J, 6wdm:J, 5we4:e, 5we6:e, 4wf1:AE, 4wf1:CE, 5wf0:e, 5wfk:e, 5wfs:e, 6wnv:J, 6wnw:J, 4woi:AE, 4woi:DE, 4www:QE, 4www:XE, 6x6t:K, 6x7f:K, 6x7k:K, 6x9q:K, 6xdq:K, 6xdr:K, 6xe0:D, 6xgf:K, 6xii:K, 6xij:K, 6xza:E1, 6xzb:E1, 6y69:e, 7y7c:E, 7y7d:E, 7y7e:E, 7y7f:E, 7y7g:E, 7y7h:E, 4ybb:AE, 4ybb:BE, 2ykr:E, 6ysr:e, 6yss:e, 6yst:e, 6ysu:e, 6ztj:AE, 6ztl:AE, 6ztm:AE, 6ztn:AE, 6zto:AE, 6ztp:AE, 7zta:S051, 6zu1:AE
14 3qp5:A 251 76 0.0669 0.0797 0.2632 8.7 3qp1:A, 3qp2:A, 3qp4:A, 3qp5:B, 3qp5:C, 3qp5:D
15 6gua:A 821 84 0.0769 0.0280 0.2738 9.2 6gua:B, 6gua:C, 6gua:D, 6gua:E, 6gua:F, 6gua:G, 6gua:H
16 8uou:A 169 48 0.0535 0.0947 0.3333 9.7 8uou:B, 8up3:E, 8up3:F, 8up6:B, 8up6:C, 8up8:A, 8up8:B, 8up8:C

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218