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BioLiP
>protein
MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHI

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6dnh:C 117 60 1.0000 0.5128 1.0000 7.68e-39 8e3i:C, 8e3q:C, 6fuw:C, 8r8r:C, 2rhk:D, 6urg:C, 6uro:C
2 8ro0:O 342 29 0.1833 0.0322 0.3793 0.001 8ro1:O
3 8ch6:U 295 29 0.1667 0.0339 0.3448 0.008 7a5p:P, 8c6j:M, 6ff4:P, 6ff7:P, 9fmd:O, 8i0p:O, 8i0r:O, 8i0s:O, 8i0t:O, 8i0u:O, 8i0v:O, 8i0w:O, 6icz:O, 6id0:O, 6id1:O, 5mqf:P, 6qdv:M, 7qtt:U, 8ro2:O, 7w59:O, 7w5a:O, 7w5b:O, 5xjc:O, 5yzg:O, 5z56:O, 5z57:O, 6zym:P
4 7abi:P 237 29 0.1667 0.0422 0.3448 0.011 7aav:P, 7abg:P
5 5u6k:E 191 24 0.1833 0.0576 0.4583 2.2 5u6k:A, 5u6k:B, 5u6k:C, 5u6k:D
6 4cs7:C 172 21 0.1167 0.0407 0.3333 2.5 4cs7:A, 4cs7:B, 4cs7:E, 4cs8:A, 4cs8:B, 4cs8:C, 4cs8:E, 4cs9:A, 4cs9:B, 4cs9:C, 4cs9:E, 4csa:C, 4csa:A, 4csa:B, 4csa:E
7 5b4x:A 710 20 0.1500 0.0127 0.4500 2.7 3a7q:A, 5b4x:C, 2e26:A
8 5h7n:B 460 35 0.1833 0.0239 0.3143 3.8 5h7n:A, 4xhs:A, 4xhs:B
9 2y0c:A 461 55 0.2833 0.0369 0.3091 3.8 2y0c:B, 2y0c:C, 2y0c:D, 2y0d:A, 2y0d:B, 2y0d:C, 2y0d:D, 2y0e:A, 2y0e:B, 2y0e:C, 2y0e:D
10 1f28:A 295 25 0.1833 0.0373 0.4400 4.2 1ci7:A, 1ci7:B, 1f28:B, 1f28:C, 1f28:D
11 2d9n:A 77 22 0.1500 0.1169 0.4091 4.2 2rhk:C
12 6mfo:A 333 25 0.2333 0.0420 0.5600 4.7
13 5t4m:A 347 25 0.2333 0.0403 0.5600 5.3 6e8f:A, 6e8f:C, 6e8f:B, 5t4m:B, 5t4n:A, 5t4n:B
14 5uly:C 221 25 0.2333 0.0633 0.5600 5.8 5uly:B
15 6k7s:B 286 16 0.1333 0.0280 0.5000 5.8 6k7r:A, 6k7r:B, 6k7s:A
16 4n8y:A 300 18 0.1500 0.0300 0.5000 7.3 4n8y:B
17 6c5l:BC 120 45 0.2500 0.1250 0.3333 7.7 6c5l:DC, 4v5j:BC, 4v5j:DC, 4v7j:AC, 4v7j:BC, 4v7k:AC, 4v7k:BC, 4v8n:BC, 4v8n:DC, 4v8x:BC, 4v8x:DC
18 7d1c:A 491 28 0.1500 0.0183 0.3214 9.6 4ct0:A, 7d19:A, 7d19:B, 7dli:A, 7dli:B, 7dli:C, 6kx5:A, 6kx6:A, 6kx6:B, 6kx7:A, 6lue:A, 6lue:B, 7wva:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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