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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MPTKQQLLYEGKAKKIYATDEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLFLKLREAGIANHFIEKLSPTEQ
LVRRVTIIPLEVVVRNVVAGSLAKRIGLEEGTPLEAPLVEFYYKNDDLGDPLLLEDHIFILKLASREEVAALKQAALAVN
DVLRLHFAERNVRLIDFKLEFGRTADGAILLADEISPDTCRLWDAKTNEKLDKDVFRRDLGSLTDAYEVILQRLGGE

The query sequence (length=237) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ywv:A 237 237 1.0000 1.0000 1.0000 1.63e-173 2ywv:B
2 4fe2:B 235 230 0.5612 0.5660 0.5783 9.22e-96 4fe2:A, 4fgr:A, 4fgr:B, 4nye:A, 4nye:B
3 3nua:B 237 234 0.5527 0.5527 0.5598 1.89e-91 3nua:A
4 2z02:A 242 232 0.4937 0.4835 0.5043 1.16e-75 2yzl:A, 2z02:B
5 4o7n:A 233 230 0.5021 0.5107 0.5174 6.33e-75 4o7l:A, 4o7r:A, 4o7s:A, 4o7t:A, 4o7v:A, 4o7w:A, 4o7y:A, 4o7z:A, 4o81:A, 4o81:B, 4o82:A, 4o82:B, 4o83:A, 4o83:B, 4o84:A, 4o84:B, 4o86:A, 3u54:A, 3u54:B
6 2gqr:A 237 232 0.4304 0.4304 0.4397 6.72e-64 2gqr:B, 2gqs:A, 2gqs:B
7 7ale:A 419 227 0.3291 0.1862 0.3436 9.75e-32 7ale:B, 6yb8:A, 6yb8:B, 6yb9:A, 6yb9:B
8 6yx3:A 297 226 0.2532 0.2020 0.2655 2.10e-12 6yy6:A, 6yy7:A, 6yy8:A, 6yy9:A, 6yya:A, 6yyb:A, 6yyc:A, 6yyd:A, 6z0q:A, 6z0r:A
9 1obg:A 305 243 0.2616 0.2033 0.2551 3.25e-05 2cnq:A, 2cnu:A, 2cnv:A, 1obd:A
10 2vpr:A 197 104 0.1097 0.1320 0.2500 0.33
11 8qnd:A 297 83 0.0928 0.0741 0.2651 0.96 8qnd:C, 8qnd:B, 8qnd:D
12 5jp0:A 745 102 0.1097 0.0349 0.2549 3.8 5jp0:B
13 4q2t:A 590 69 0.0844 0.0339 0.2899 7.4 4q2t:B, 4q2x:A, 4q2x:B
14 7znn:B 559 73 0.0844 0.0358 0.2740 8.6 7zn7:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218