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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MPTGYAGITHEMSEFYEPVPPVVTPGTDLKGGGFTAPSDAIVLFDGKDLSAWESVKGGAAEWDVHDGVFTVNKKKGDIQT
KQKFNDFQMHIEWQVPTNITGESQSRGNSGIFLQGMYEVQVLDCYNNPTYVNGQTGSIYKQSIPLANAMRKPGEWNVYDI
IYTAPTFKEDGSYRTHPTVTVIQNGVVLQNHTTILGTTEWIGFPQVKKHGAGPIILQSHGDPSEPISFRNIWIREL

The query sequence (length=236) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4qhz:C 240 236 1.0000 0.9833 1.0000 2.16e-178 4qhz:A, 4qhz:B, 4qhz:D
2 8tde:A 256 250 0.2797 0.2578 0.2640 9.53e-07 8rr2:A, 8rr2:B
3 8v31:C 251 251 0.2669 0.2510 0.2510 2.02e-04 8v31:A
4 4e5v:A 280 51 0.0890 0.0750 0.4118 0.25 4e5v:B
5 8p0j:B 1155 38 0.0551 0.0113 0.3421 0.91 8p0k:B, 8p0n:B
6 7aoh:B 1134 38 0.0551 0.0115 0.3421 0.93 7amv:B, 7aof:B, 7aoz:B, 7ap8:B, 7ap9:B, 8c8h:B, 6rfl:B, 6ric:B, 6rid:B, 6rie:B
7 4atb:A 334 121 0.1356 0.0958 0.2645 6.2 4at8:A, 4at8:C, 4at9:A, 4atb:C
8 5fp2:A 499 44 0.0636 0.0301 0.3409 6.3
9 9int:A 282 69 0.0847 0.0709 0.2899 7.5
10 3ws1:A 360 38 0.0720 0.0472 0.4474 7.6 3wrz:A, 3wrz:B, 3ws0:A, 3ws0:B, 3ws0:C, 3ws1:B, 3ws1:C, 3ws2:A, 3ws2:B, 3ws2:C, 3ws5:B
11 6r79:A 220 129 0.1017 0.1091 0.1860 8.5 6r73:A, 6r73:B, 6r78:A, 6r78:B, 6r79:D, 6r79:B, 6r79:C, 6rzr:A, 6rzr:B, 6rzs:A, 6rzs:B, 6s0h:A, 6s0h:B, 4ubq:A, 6yi4:AAA, 6yi4:BBB, 6yi4:CCC

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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