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BioLiP
>protein
MPTDFPLPSQQKPNSAVDYTLTTLDAVANWARQGSFWPVTFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMIVA
GTLTNKMAPVLRQVYDQMPEPRWVISMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGVFQLQRKMRN
TKITRMWYRK

The query sequence (length=170) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7o6y:K 177 170 1.0000 0.9605 1.0000 1.54e-128 6gcs:K, 7o71:K, 6rfq:K, 6rfr:K, 6rfs:K, 4wz7:K, 6y79:K, 6yj4:B
2 7zm7:K 182 167 0.8588 0.8022 0.8743 1.47e-112 6h8k:K, 7zmb:K, 7zmg:K
3 8b9z:B 182 170 0.7118 0.6648 0.7118 1.07e-95 8ba0:B, 8esw:S7, 8esz:S7
4 8q0j:B 158 158 0.6882 0.7405 0.7405 1.45e-93 7ak5:B, 7ak6:B, 7b93:B, 8c2s:B, 8ca3:B, 8ca5:B, 7dgq:D, 7dgr:D, 7dgs:D, 7dgz:D, 7dh0:D, 7dkf:D2, 6g2j:B, 6g72:B, 5gpn:a, 5gup:I, 8iao:B, 8iap:B, 8ib4:B, 8ib5:B, 8ib9:B, 8iba:B, 8ibd:B, 8ibe:B, 8ic2:B, 8ic3:B, 5lc5:B, 5ldw:B, 5ldx:B, 5lnk:6, 5o31:B, 8olt:B, 8om1:B, 7psa:B, 8pw5:6, 8pw6:6, 8pw7:6, 8q0a:B, 8q0f:B, 8q0m:B, 8q0o:B, 8q0q:B, 8q1p:B, 8q1u:B, 8q1y:B, 8q25:B, 8q45:B, 8q46:B, 8q47:B, 8q48:B, 8q49:B, 8q4a:B, 6q9d:S7, 6qa9:S7, 6qbx:S7, 6qc2:S7, 6qc3:S7, 6qc4:S7, 6qc5:S7, 6qc6:S7, 6qc7:S7, 6qc8:S7, 6qc9:S7, 6qca:S7, 6qcf:S7, 7qsd:B, 7qsk:B, 7qsl:B, 7qsm:B, 7qsn:B, 7qso:B, 7r41:B, 7r42:B, 7r43:B, 7r44:B, 7r45:B, 7r46:B, 7r47:B, 7r48:B, 7r4c:B, 7r4d:B, 7r4f:B, 7r4g:B, 8rgp:6, 8rgq:6, 8rgr:6, 8rgt:6, 8ud1:1B, 8ueo:1B, 8uep:1B, 8ueq:1B, 8uer:1B, 8ues:1B, 8uet:1B, 8ueu:1B, 8uev:1B, 8uew:1B, 8uex:1B, 8uey:1B, 8uez:1B, 8ugh:1B, 8ugi:1B, 8ugj:1B, 8ugn:1B, 8ugn:5B, 8ugp:1B, 8ugr:1B, 8ugr:5B, 7v2c:C, 7v2d:C, 7v2e:C, 7v2f:C, 7v2h:C, 7v2k:C, 7v2r:C, 7v30:C, 7v31:C, 7v32:C, 7v33:C, 7v3m:C, 7vb7:C, 7vbn:C, 7vbz:C, 7vwj:C, 7vxp:C, 7vxu:C, 7vy8:C, 7vya:C, 7vyf:C, 7vyh:C, 7vyn:C, 7vz1:C, 7vzv:C, 7vzw:C, 7w00:C, 7w0h:C, 7w0r:C, 7w0y:C, 7w1o:C, 7w1p:C, 7w1t:C, 7w1u:C, 7w1v:C, 7w1z:C, 7w20:C, 7w2k:C, 7w2l:C, 7w2r:C, 7w2u:C, 7w2y:C, 7w31:C, 7w32:C, 7w35:C, 7w4c:C, 7w4d:C, 7w4e:C, 7w4f:C, 7w4g:C, 7w4j:C, 7w4k:C, 7w4l:C, 7w4m:C, 7w4n:C, 7w4q:C, 5xtb:C, 5xtd:C, 5xth:C, 5xti:C, 5xti:BC, 7zd6:6, 7zdh:6, 7zdj:6, 7zdm:6, 7zdp:6, 7zeb:6, 6zk9:6, 6zkc:6, 6zkd:6, 6zke:6, 6zkf:6, 6zkg:6, 6zkh:6, 6zki:6, 6zkj:6, 6zkk:6, 6zkl:6, 6zkm:6, 6zkn:6, 6zko:6, 6zkp:6, 6zkq:6, 6zkr:6, 6zks:6, 6zkt:6, 6zku:6, 6zkv:6, 6zr2:B, 6ztq:B
5 8e73:S7 158 157 0.6765 0.7278 0.7325 3.22e-88 7a23:E, 7a24:E, 7aqr:B, 7ar7:B, 7ar8:B, 7arb:B, 8bee:B, 8bpx:B, 8bq5:B, 8bq6:B, 6x89:S7
6 7arc:B 154 153 0.6706 0.7403 0.7451 5.47e-83 7ard:B
7 7tgh:S7 162 142 0.6059 0.6358 0.7254 1.43e-82 8b6f:AT, 8bqs:AT, 8gym:s7, 8gym:S7, 8gzu:s7, 8gzu:S7
8 8qby:B 148 143 0.6412 0.7365 0.7622 1.88e-81
9 8iuf:S7 201 146 0.5882 0.4975 0.6849 9.59e-75 8j9h:S7, 8j9i:S7, 8j9j:S7
10 7q5y:F 135 136 0.4941 0.6222 0.6176 9.63e-66 7q5y:L, 7q5y:R, 7q5y:X
11 6i0d:6 166 141 0.4882 0.5000 0.5887 2.48e-59 4hea:6, 4hea:G, 6i0d:G, 6i1p:6, 6i1p:G, 3i9v:6, 3i9v:F, 3ias:6, 3ias:F, 3ias:O, 3ias:X, 3m9s:6, 3m9s:F, 6q8o:6, 6q8o:G, 6q8w:6, 6q8w:G, 6q8x:6, 6q8x:G, 6y11:6, 6y11:G, 6ziy:6, 6zjl:6, 6zjn:6, 6zjy:6
12 8e9g:B 183 141 0.4529 0.4208 0.5461 1.39e-57 8e9h:B, 8e9i:B
13 7z7s:B 213 164 0.4588 0.3662 0.4756 1.49e-51 7nyr:B, 7nyu:B, 7nyv:B, 7p61:B, 7p62:B, 7p63:B, 7p64:B, 7p7c:B, 7p7j:B, 7p7k:B, 7p7l:B, 7p7m:B, 7z7r:B, 7z7t:B, 7z7v:B, 7z80:B, 7z83:B, 7z84:B
14 6nbq:K 212 151 0.4235 0.3396 0.4768 4.65e-51 6hum:K, 6khi:K, 6khj:K, 6l7o:K, 6l7p:K, 6nbx:K, 6nby:K, 6tjv:K
15 2fug:6 144 140 0.4294 0.5069 0.5214 5.20e-50 2fug:F, 2fug:O, 2fug:X, 3iam:6, 3iam:F, 2ybb:6
16 7p69:B 169 152 0.4412 0.4438 0.4934 1.42e-46 7nz1:B, 7p7e:B, 7zc5:B, 7zci:B
17 7awt:B 141 124 0.4059 0.4894 0.5565 3.27e-44
18 7wfg:K 167 155 0.3882 0.3952 0.4258 6.59e-44 7wg5:K
19 6u8y:J 177 155 0.3294 0.3164 0.3613 1.03e-31 6u8y:j
20 6cfw:J 143 113 0.2765 0.3287 0.4159 1.67e-30
21 7z0s:G 250 123 0.3059 0.2080 0.4228 7.54e-27 7z0t:G
22 6qgr:G 253 88 0.1353 0.0909 0.2614 3.71e-04 6qgt:G, 6qii:G
23 4omf:G 231 92 0.1412 0.1039 0.2609 0.006 4ci0:B, 3zfs:B
24 3abo:A 453 91 0.1471 0.0552 0.2747 0.11 3abo:C, 3abq:A, 3abq:C, 3abr:A, 3abr:C, 3abs:A, 3abs:C, 3any:A, 3any:C, 3ao0:A, 3ao0:C, 7xrm:A, 7xrm:C, 7xrn:A, 7xrn:C, 5ysn:A, 5ysn:C, 5ysr:A, 5ysr:C
25 7t2r:E 179 27 0.0824 0.0782 0.5185 0.14 7t2r:J, 7t30:E, 7t30:J
26 8w7y:A 474 64 0.1118 0.0401 0.2969 0.14
27 5xf9:C 178 19 0.0706 0.0674 0.6316 0.25 5xf9:G, 5xfa:C, 5xfa:G
28 5sup:B 383 28 0.0647 0.0287 0.3929 0.31 5sup:A, 5sup:C, 5suq:A, 5suq:C
29 1l1e:A 272 89 0.1294 0.0809 0.2472 0.72 1l1e:B
30 7v3n:A 317 54 0.1000 0.0536 0.3148 0.81 8hiv:A, 7v2t:A, 7v2u:A, 7v2x:A, 7v34:A, 7v36:A, 7v3e:A, 7v3e:B, 7v3e:C, 7v3o:A
31 7uqc:A 219 47 0.1000 0.0776 0.3617 5.9 7k7r:A, 7k7r:D, 7uqc:D
32 5odc:E 298 33 0.0706 0.0403 0.3636 6.1 5odc:K, 5odh:E, 5odh:K, 5odi:E, 5odi:K, 5odq:E, 5odq:K, 5odr:E, 5odr:K
33 1tpy:A 285 39 0.0706 0.0421 0.3077 6.7
34 8i90:A 440 64 0.0941 0.0364 0.2500 6.8 8i90:B, 8i94:A, 8i94:B
35 8c6j:J 367 48 0.0824 0.0381 0.2917 6.9 8ch6:O, 7dh6:B, 7dh6:C, 7dh6:D, 6ff4:D, 9fmd:T, 8i0p:T, 8i0r:T, 8i0t:T, 8i0w:T, 6id0:T, 6id1:T, 6qdv:J, 8ro2:T, 5xjc:T, 5yzg:T, 5z56:T, 5z57:T, 5z58:T, 6zym:D
36 5ah5:A 789 26 0.0588 0.0127 0.3846 7.5 5ah5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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