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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MPSVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALI
AAGLRDRVKVIVGGAPLSQDFADEIGADGYAPDAASATELCRQLL

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1y80:A 125 125 1.0000 1.0000 1.0000 2.52e-88
2 4jgi:B 206 120 0.4320 0.2621 0.4500 3.08e-35 4jgi:A
3 7xcn:P 215 123 0.4720 0.2744 0.4797 1.39e-34 7xcn:M, 7xcn:N, 7xcn:O, 7xcn:Q, 7xcn:R
4 8g3h:A 841 124 0.4000 0.0595 0.4032 3.27e-21
5 8sse:A 507 127 0.4000 0.0986 0.3937 1.10e-20 8sse:B, 8sse:C, 8sse:D, 8sse:E, 8sse:F
6 3ezx:A 212 96 0.3360 0.1981 0.4375 1.03e-18
7 2i2x:B 258 121 0.3200 0.1550 0.3306 1.73e-17 2i2x:D, 2i2x:F, 2i2x:H, 2i2x:J, 2i2x:L, 2i2x:N, 2i2x:P
8 3bul:A 577 95 0.2560 0.0555 0.3368 2.33e-14 6bdy:A, 1bmt:A, 1bmt:B, 6bm5:A, 6bm6:A, 3iv9:A, 3iva:A, 1k7y:A, 1k98:A, 1msk:A
9 1xrs:B 212 81 0.2080 0.1226 0.3210 6.08e-07
10 1id8:A 137 88 0.2080 0.1898 0.2955 2.51e-06
11 8t0q:A 257 120 0.2640 0.1284 0.2750 2.10e-05 8t0q:B, 8t0v:B
12 3kow:B 728 111 0.2400 0.0412 0.2703 4.74e-04 3kow:A, 3kow:C, 3kow:D, 3kox:A, 3kox:B, 3kox:C, 3kox:D, 3koy:A, 3koy:B, 3koy:D, 3koy:C, 3koz:A, 3koz:B, 3koz:C, 3koz:D, 3kp0:A, 3kp0:B, 3kp0:C, 3kp0:D, 3kp1:C, 3kp1:A, 3kp1:D, 3kp1:B
13 1cb7:A 137 79 0.1760 0.1606 0.2785 0.002 1cb7:C, 1ccw:A, 1ccw:C, 6h9e:A, 6h9e:C, 6h9f:A, 6h9f:C, 1i9c:A, 1i9c:C
14 6oxd:A 736 104 0.2160 0.0367 0.2596 0.068 6oxc:A
15 8j2y:A 327 106 0.2240 0.0856 0.2642 0.11 8j2y:B
16 5lj5:v 426 30 0.1040 0.0305 0.4333 0.21
17 3gxa:C 244 93 0.2080 0.1066 0.2796 0.79 6dzx:A, 6dzx:B, 6dzx:C, 6dzx:D, 6dzx:E, 6dzx:F, 3gxa:A, 3gxa:B, 3gxa:D, 3gxa:E, 3gxa:F, 3ir1:A, 3ir1:B, 3ir1:C, 3ir1:D, 3ir1:E, 3ir1:F, 6oja:A, 6oja:B, 6oja:C, 6oja:D, 6oja:E, 6oja:F
18 2b33:B 126 34 0.1040 0.1032 0.3824 1.4
19 1e1c:A 727 137 0.3120 0.0536 0.2847 2.3 1e1c:C, 1req:A, 1req:C, 2req:A, 2req:C, 3req:A, 4req:A, 4req:C, 5req:A, 5req:C, 6req:A, 6req:C, 7req:A, 7req:C
20 5c55:A 307 41 0.1280 0.0521 0.3902 2.7 5c55:B
21 5vyz:A 1144 63 0.1600 0.0175 0.3175 5.5 5vyw:D, 5vyz:B, 5vyz:D, 5vz0:A, 5vz0:B, 5vz0:D, 7zyy:A, 7zyy:C, 7zyy:B, 7zyy:D, 7zyz:A, 7zz0:A, 7zz1:A, 7zz2:A, 7zz3:A, 7zz3:C, 7zz3:B, 7zz3:D, 7zz4:A, 7zz5:A, 7zz6:D, 7zz6:A, 7zz8:A, 7zz8:C, 7zz8:D, 7zz8:B
22 5vyz:C 1083 63 0.1600 0.0185 0.3175 5.6 5vyw:A, 5vyw:B, 5vyw:C, 5vz0:C
23 5ngy:A 1265 51 0.1520 0.0150 0.3725 9.4 6htv:A, 5lfc:A, 5lfc:B, 5ngy:B, 5o8l:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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