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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MPLILLPAVDVVEGRAVRLVQGKAGSQTEYGSAVDAALGWQRDGAEWIHLVDLDAAFGRGSNHELLAEVVGKLDVQVELS
GGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDS
EGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALA
AVRD

The query sequence (length=244) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2y88:A 244 244 0.9959 0.9959 0.9959 6.52e-173 2y85:A, 2y85:B, 2y85:C, 2y85:D, 3zs4:A
2 5dn1:A 240 240 0.6721 0.6833 0.6833 3.02e-112
3 4tx9:A 246 240 0.6721 0.6667 0.6833 4.92e-105
4 5abt:A 246 244 0.3402 0.3374 0.3402 1.06e-27 5a5w:A, 5ab3:A, 5ab3:B, 5ab3:C, 5ahf:A, 5ahi:A, 5g4w:A
5 1h5y:B 253 214 0.2705 0.2609 0.3084 4.46e-16 1h5y:A
6 7qc8:A 250 152 0.1844 0.1800 0.2961 3.52e-15 4ewn:D, 2wjz:E, 3zr4:E
7 3iiv:B 262 173 0.1844 0.1718 0.2601 4.58e-11 7ac8:A, 7ac8:C, 7ac8:E, 6ct3:A, 5d2t:A, 5d2w:A, 6dc1:A, 6dc1:B, 6dc1:H, 6dc1:K, 6dkv:A, 6dnj:A, 1gpw:C, 1gpw:E, 6rtz:A, 6ru0:A, 6ru0:C, 6ru0:E, 2wjz:A, 2wjz:C
8 9fcf:A 265 207 0.2213 0.2038 0.2609 1.24e-04 9fcg:A
9 3tdm:A 120 86 0.1025 0.2083 0.2907 2.88e-04 3tdm:B, 3tdm:C, 3tdm:D
10 3tdm:A 120 82 0.0902 0.1833 0.2683 0.97 3tdm:B, 3tdm:C, 3tdm:D
11 5lsm:A 339 50 0.0697 0.0501 0.3400 0.051 5lsm:B, 5lsm:C, 5lsm:D, 5lsm:E, 5lsm:F, 5lsm:G, 5lsm:H
12 1ox4:B 538 51 0.0697 0.0316 0.3333 0.11 1jvn:B, 1ox4:A, 1ox5:A, 1ox5:B, 1ox6:B
13 6ei9:A 306 145 0.1352 0.1078 0.2276 0.12 6ei9:B
14 1yiq:A 684 114 0.1270 0.0453 0.2719 0.50
15 1ep3:A 311 78 0.0984 0.0772 0.3077 0.82 1ep1:A, 1ep2:A, 5ksw:A, 5ksw:C, 5ue9:A, 5ue9:C
16 1ep3:A 311 54 0.0574 0.0450 0.2593 4.0 1ep1:A, 1ep2:A, 5ksw:A, 5ksw:C, 5ue9:A, 5ue9:C
17 6e2a:A 326 80 0.1066 0.0798 0.3250 1.0 2gjl:A, 2gjn:A
18 3mly:H 230 70 0.0861 0.0913 0.3000 2.5 5gkr:A, 3mlx:H, 3mlx:I, 3mly:I, 3mlz:H, 6y1n:H
19 6bka:A 374 41 0.0697 0.0455 0.4146 3.2
20 5hhk:B 289 41 0.0574 0.0484 0.3415 4.0
21 5mkw:A 119 23 0.0410 0.0840 0.4348 4.7 5mkw:B
22 5a65:A 208 139 0.1352 0.1587 0.2374 5.5 5a64:A, 5a64:B, 5a65:B
23 3pf2:A 317 26 0.0574 0.0442 0.5385 6.1 3pg2:A, 3pg2:B
24 7l00:C 315 40 0.0615 0.0476 0.3750 6.8 7l00:A, 7l00:B, 7l00:D
25 3g0k:A 129 41 0.0492 0.0930 0.2927 7.0
26 7t8k:A 286 16 0.0328 0.0280 0.5000 8.3 7t8k:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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