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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYIFDLFYKRKAISRELYEYCIK
EGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICRVPKSKLEVGRIIECTHCGCRGCSG

The query sequence (length=144) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8c6j:L 144 144 1.0000 1.0000 1.0000 1.91e-106 7aav:Q, 7abf:Q, 7abg:Q, 7abi:Q, 8ch6:T, 6ff4:Q, 6ff7:Q, 9fmd:N, 8i0p:N, 8i0r:N, 8i0s:N, 8i0t:N, 8i0u:N, 8i0v:N, 8i0w:N, 6icz:N, 6id0:N, 6id1:N, 5mqf:Q, 8q7n:Q, 6qdv:L, 8qo9:Q, 7qtt:T, 8ro2:N, 7w59:N, 7w5a:N, 7w5b:N, 5xjc:N, 5yzg:N, 5z56:N, 5z57:N, 6zym:Q
2 8ro0:N 142 142 0.6875 0.6972 0.6972 7.93e-79 8ro1:N
3 3jb9:e 144 143 0.5833 0.5833 0.5874 8.31e-58
4 2my1:A 159 154 0.5417 0.4906 0.5065 3.06e-51 7b9v:L, 6bk8:I, 7dco:N, 6exn:L, 5gm6:T, 5gmk:T, 6j6g:T, 6j6h:T, 6j6n:T, 6j6q:T, 5lj3:L, 5lj5:L, 5lqw:E, 5mps:L, 5mq0:L, 5wsg:T, 5y88:L, 5ylz:L
5 2cir:A 288 50 0.0972 0.0486 0.2800 0.76 2ciq:A, 2cis:A
6 4pqg:A 506 35 0.0833 0.0237 0.3429 1.4 4pqg:B
7 6uo8:A 689 55 0.1111 0.0232 0.2909 3.8 7c7q:A, 7c7s:A, 7ca3:A, 7cum:A, 7eb2:C, 4mqf:A, 4mr7:A, 4mr8:A, 4mr9:A, 4mrm:A, 4ms1:A, 4ms3:A, 4ms4:A, 6uo9:A, 6w2x:A, 6w2y:A, 6w2y:B, 6wiv:A
8 5xuh:C 125 38 0.0764 0.0880 0.2895 6.7 5vcb:c, 5vcb:B, 5vcb:M, 5vcb:U, 5vcb:S, 5xuh:B, 5xuh:A
9 5xwy:A 1117 72 0.1389 0.0179 0.2778 9.3
10 5xwp:A 1125 72 0.1389 0.0178 0.2778 9.3 5xwp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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