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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MPKHEFSVDMTCGGCAEAVSRVLNKLGGVKYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGLE

The query sequence (length=68) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5t7l:A 68 67 0.9853 0.9853 1.0000 4.23e-45 1fee:A, 3iwl:A, 3iwx:A, 3iwx:B, 4qot:A, 4qot:B, 1tl4:A, 4ydx:A, 7zc3:A
2 1fd8:A 73 61 0.3824 0.3562 0.4262 1.26e-07 3k7r:A, 3k7r:B, 3k7r:C, 3k7r:D, 3k7r:E, 3k7r:F, 3k7r:G, 3k7r:H, 3k7r:I, 3k7r:J, 3k7r:K, 3k7r:L, 5vde:B, 5vde:D, 5vdf:A, 5vdf:C, 5vdf:E, 5vdf:G, 5vdf:H
3 4y2i:A 65 52 0.2647 0.2769 0.3462 0.003
4 6ff2:A 67 39 0.2206 0.2239 0.3846 0.005 6ff2:B
5 1kqk:A 80 28 0.1912 0.1625 0.4643 0.026
6 6fon:A 252 64 0.2500 0.0675 0.2656 0.46 1do5:A, 1do5:B, 1do5:C, 1do5:D, 6fn8:A, 6fn8:B, 6fol:A, 6fol:D, 6fol:E, 6fol:H, 6fon:C, 6fp6:B, 6fp6:D, 6fp6:F, 6fp6:H, 6fp6:J, 6fp6:L, 6fp6:N, 6fp6:P, 6fp6:R, 6fp6:T, 6fp6:V, 6fp6:X, 2rsq:A
7 8smr:F 200 63 0.2647 0.0900 0.2857 0.58 8snh:F
8 6ba1:A 316 34 0.1471 0.0316 0.2941 1.8 6ba1:B, 6ba1:C, 6ba1:D, 6ba1:E, 6ba1:F, 6ba1:G, 6ba1:H, 6ba1:I, 6ba1:J, 6ba1:K, 6ba1:L, 6ba1:M, 6ba1:N, 6ba1:O, 6ba1:P, 6ba1:Q, 6ba1:R
9 4wad:A 498 30 0.1618 0.0221 0.3667 2.3 4x6l:A, 4x6l:B, 4x6l:C, 4x7m:A, 4x7m:B, 4x7r:A, 4x7r:B
10 6q91:D 360 24 0.1176 0.0222 0.3333 3.5 6qje:D
11 1t71:A 281 38 0.2059 0.0498 0.3684 3.6
12 1mwz:A 73 52 0.1765 0.1644 0.2308 4.3
13 8c2q:A 100 45 0.2647 0.1800 0.4000 4.6 8bbz:CCC
14 3n92:A 550 29 0.1618 0.0200 0.3793 5.7 3n98:A
15 5vqe:A 559 35 0.1765 0.0215 0.3429 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218