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BioLiP
>protein
MPIASYAQELKLALHQYPNFPSEGILFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGPTLALA
LGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYNFVME
LDFLKGRSKLNAPVFTLLN

The query sequence (length=179) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5vjp:B 179 179 1.0000 1.0000 1.0000 3.72e-128 1g2p:A, 5vjn:A, 5vjn:B, 5vjp:A
2 6fci:A 179 176 0.4525 0.4525 0.4602 4.41e-47 6fch:A, 6fch:B, 6fci:D, 6fci:B, 6fci:C, 6fcl:A, 6fcl:B, 6fd4:B, 6fd4:A, 6fd5:A, 6fd5:B, 6fd6:A, 6fd6:B, 6hgp:A, 6hgq:A, 6hgq:C, 6hgq:D, 6hgq:B, 6hgr:A, 6hgr:B, 6hgs:A, 6hgs:B, 1ore:A, 4x44:A, 4x45:B, 1zn7:A, 1zn7:B, 1zn8:A, 1zn8:B, 1zn9:B
3 4m0k:C 176 178 0.4358 0.4432 0.4382 6.75e-42 4m0k:A, 4m0k:B, 4m0k:D
4 5znq:A 183 168 0.3911 0.3825 0.4167 3.86e-40 5b6h:A, 5y07:A, 5y07:B, 5zc7:A, 5zc7:B, 5zmi:A, 5znq:B, 5zoc:A
5 5yw5:A 178 161 0.3855 0.3876 0.4286 1.25e-38 5yw5:B, 5yw5:C, 5yw5:D
6 8izj:B 183 167 0.3799 0.3716 0.4072 5.41e-36 8izj:A, 7y94:A, 7y94:B
7 1l1q:A 181 165 0.3520 0.3481 0.3818 2.25e-31 1l1r:A
8 5vn4:A 237 156 0.3017 0.2278 0.3462 9.12e-20 5vn4:B
9 1qb7:A 236 172 0.3128 0.2373 0.3256 1.66e-19 1qb8:A
10 1mzv:A 216 174 0.3128 0.2593 0.3218 2.26e-19
11 7rmw:A 270 113 0.1676 0.1111 0.2655 3.45e-05 1p4a:A, 1p4a:B, 1p4a:C, 1p4a:D, 7rmw:B, 7rmw:C, 7rmw:F
12 6w1i:B 194 162 0.2402 0.2216 0.2654 4.23e-04 2fxv:A, 2fxv:B, 6w1i:A, 6w1i:C, 6w1i:D, 1y0b:A, 1y0b:B, 1y0b:C, 1y0b:D
13 4rv4:B 211 176 0.2235 0.1896 0.2273 0.005 4rv4:A, 4rv4:C
14 4paw:A 197 123 0.1732 0.1574 0.2520 0.007 4paw:B
15 5xtk:A 150 104 0.1453 0.1733 0.2500 0.055
16 4twb:A 278 40 0.0894 0.0576 0.4000 0.11 4twb:B, 4twb:C, 4twb:D, 4twb:E, 4twb:F
17 7f06:A 181 134 0.2067 0.2044 0.2761 0.11 7f06:B
18 1a95:B 150 104 0.1453 0.1733 0.2500 0.13 1a95:C, 1a96:B, 1a96:C, 1a97:B, 1a97:C, 4jit:B, 4jit:C
19 3dez:A 206 111 0.1453 0.1262 0.2342 0.22 3dez:B
20 1u9z:A 274 39 0.0950 0.0620 0.4359 0.46 1u9z:B, 1u9z:C, 1u9z:D
21 2jbh:B 213 34 0.0670 0.0563 0.3529 0.50 2jbh:A
22 3cc2:N 186 52 0.1117 0.1075 0.3846 0.68 3cc4:N, 3cc7:N, 3cce:N, 3ccj:N, 3ccl:N, 3ccm:N, 3ccq:N, 3ccr:N, 3ccs:N, 3ccu:N, 3ccv:N, 3cd6:N, 3cma:N, 3cme:N, 3cpw:M, 3cxc:M, 1ffk:K, 3g4s:N, 3g6e:N, 3g71:N, 3i55:N, 3i56:N, 1jj2:M, 1k73:O, 1k8a:O, 1k9m:O, 1kc8:O, 1kd1:O, 1kqs:M, 1m1k:O, 1m90:O, 1n8r:O, 1nji:O, 2otj:N, 2otl:N, 3ow2:M, 1q7y:O, 1q81:O, 1q82:O, 1q86:O, 2qa4:N, 2qex:N, 1qvf:M, 1qvg:M, 1s72:N, 4v4p:AQ, 4v4r:BS, 4v4s:BS, 4v4t:BS, 4v9f:N, 1vq4:N, 1vq5:N, 1vq6:N, 1vq7:N, 1vq8:N, 1vq9:N, 1vqk:N, 1vql:N, 1vqm:N, 1vqn:N, 1vqo:N, 1vqp:N, 1w2b:M, 1yhq:N, 1yi2:N, 1yij:N, 1yit:N, 1yj9:N, 1yjn:N, 1yjw:N
23 6nfe:B 299 26 0.0838 0.0502 0.5769 0.97 6nfe:A
24 4jls:B 135 64 0.1061 0.1407 0.2969 1.3 4jls:A, 4jls:C, 4jls:D, 4jls:E, 4jls:H, 4jls:I, 4jls:J
25 2vfa:B 205 34 0.0726 0.0634 0.3824 1.7 2vfa:A
26 3mbi:A 287 26 0.0670 0.0418 0.4615 1.8 3lpn:A, 3lpn:B, 3lrt:A, 3lrt:B, 3mbi:C, 3mbi:B, 3mbi:D, 3nag:A, 3nag:B
27 5brn:B 194 34 0.0726 0.0670 0.3824 2.1 5bsk:A, 5bsk:B, 5bsk:C, 5bsk:D, 4kn6:A, 8tpy:A, 8tpy:B, 8tpy:C, 8tpy:D
28 1bzy:A 214 34 0.0726 0.0607 0.3824 2.6 6bnj:A, 6bnj:B, 6bnj:C, 6bnj:D, 5brn:A, 5brn:C, 5brn:D, 1bzy:B, 1bzy:C, 1bzy:D, 1d6n:A, 1d6n:B, 3gep:A, 3gep:B, 3ggc:A, 3ggc:B, 3ggj:A, 3ggj:B, 5hia:A, 5hia:B, 5hia:C, 5hia:D, 1hmp:A, 1hmp:B, 4ijq:A, 4ijq:B, 4ijq:C, 4ijq:D, 4rab:A, 4rab:B, 4rab:C, 4rab:D, 4rac:A, 4rac:B, 4rac:C, 4rac:D, 4rad:A, 4rad:B, 4rad:C, 4rad:D, 4rad:E, 4rad:F, 4rad:G, 4rad:H, 4ran:A, 4ran:B, 4ran:C, 4ran:D, 4rao:A, 4rao:B, 4rao:C, 4rao:D, 4raq:A, 4raq:B, 4raq:C, 4raq:D, 7san:A, 7san:B, 7san:C, 7san:D, 8tpv:A, 8tpv:B, 8tpv:C, 8tpv:D, 5w8v:A, 5w8v:B, 5w8v:C, 5w8v:D
29 6asv:C 311 68 0.1117 0.0643 0.2941 3.5 6asv:A, 6asv:B, 4s2u:A, 7xmu:A, 7xmu:F, 7xmu:C, 7xmu:D, 7xmu:B, 7xmu:E, 7xmv:A, 7xmv:F, 7xmv:C, 7xmv:E, 7xmv:B, 7xmv:D, 7xn3:A, 7xn3:E, 7xn3:C, 7xn3:B, 7xn3:D, 7xn3:F
30 8jff:A 274 32 0.0782 0.0511 0.4375 5.0 8jff:B, 8jfv:A, 8jfv:B
31 4eru:A 159 39 0.0894 0.1006 0.4103 6.2 4eru:B
32 1i5e:A 208 138 0.2011 0.1731 0.2609 6.7 1i5e:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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