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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MPGSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGK
RYAYKFDFHGIAQALQPH

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6vgd:A 98 98 1.0000 1.0000 1.0000 8.34e-73 5e8g:A, 5e8g:B, 5e8g:C, 5e8g:D, 5e8i:A, 5e8i:D, 5e8i:G, 5e8i:J, 4iri:A, 5jvt:A, 5jvt:D, 5jvt:G, 6vg2:A, 6vg2:D, 6vg8:A, 6vge:A, 6vgg:A, 5ybd:A, 5ybd:X
2 3zp5:A 92 91 0.8163 0.8696 0.8791 5.50e-59
3 4bqa:A 132 84 0.6122 0.4545 0.7143 2.56e-40
4 6da1:B 138 84 0.6020 0.4275 0.7024 7.41e-40 4bqa:D, 4bqa:G, 6da1:A, 6dat:B, 6dat:C, 6dat:D, 6dat:A, 1k78:B, 1k78:F, 1k79:A, 1k79:D, 1k7a:A, 1k7a:D, 4l0y:B, 4l0z:B, 4l18:B, 4l18:F, 4lg0:B, 1mdm:B, 3mfk:A, 3mfk:B, 2nny:A, 2nny:B, 3ri4:A, 3ri4:D, 2stt:A, 2stw:A, 3wts:C, 3wts:H, 3wtt:C, 3wtt:H, 3wtu:C, 3wtu:H, 3wtv:C, 3wtv:H, 3wtw:C, 3wtw:H, 3wtx:C, 3wtx:H, 3wty:C, 3wty:H, 3wu1:B, 5zmc:B
5 7jsa:J 88 88 0.5714 0.6364 0.6364 1.61e-37 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
6 1awc:A 110 80 0.5204 0.4636 0.6375 4.18e-36
7 4uuv:A 96 82 0.5204 0.5312 0.6220 3.18e-34 4bnc:A, 4uno:A, 4uuv:D, 4uuv:G, 4uuv:J, 4uuv:M, 4uuv:P, 4uuv:S, 4uuv:V
8 1dux:C 86 81 0.5102 0.5814 0.6173 9.26e-33 1dux:F
9 1hbx:G 112 65 0.4082 0.3571 0.6154 4.18e-25 1bc7:C, 1bc8:C, 1hbx:H, 1k6o:A
10 8bzm:H 88 82 0.4082 0.4545 0.4878 5.41e-22 8bzm:B
11 8e67:F 97 79 0.3673 0.3711 0.4557 1.01e-19 8e66:A, 8e66:F, 8e67:A, 8e67:I, 8e67:L, 4mhg:A
12 3jtg:A 95 81 0.3469 0.3579 0.4198 1.55e-17
13 1yo5:C 88 83 0.4082 0.4545 0.4819 5.41e-17
14 8eo4:F 95 85 0.3061 0.3158 0.3529 5.09e-07 8e3k:F, 8e3r:F, 8e4h:F, 8e5y:F, 8ebh:F, 8ee9:F, 8ej6:F, 8ej8:F, 8ek3:F, 8ek8:F, 8ek8:E, 8ekj:F, 8eku:F, 8ekv:F, 8ekz:F, 8em9:F, 8emd:F, 8eng:F, 8eo1:F, 8eqg:F, 8eqk:F, 8eql:F, 8evh:O, 8evi:O, 8evj:O, 1pue:E, 1pue:F, 8smh:F, 8smj:F, 8sp1:F, 8t9u:F, 8vdh:F, 8vdi:F
15 7b2e:A 548 41 0.1531 0.0274 0.3659 1.2 7ayg:A, 7ayg:B, 7ayg:C, 7ayg:D, 7ayg:E, 7ayg:F, 7ayg:G, 7ayg:H, 7b2e:B, 7b2e:C, 7b2e:D, 7b2e:E, 7b2e:F, 7b2e:G, 7b2e:H
16 3vnq:A 497 33 0.0816 0.0161 0.2424 5.1 3vnr:A, 3vns:A
17 9b1l:A 529 64 0.1531 0.0284 0.2344 5.9 9b1g:A, 9b1h:A, 9b1i:A, 9b1j:A, 9b1k:A, 9b1m:A, 9b1n:A, 9b1o:A
18 5icc:A 352 73 0.1939 0.0540 0.2603 6.1 5ice:A, 5icf:A
19 4h03:A 414 68 0.1837 0.0435 0.2647 6.6 3buz:A, 1giq:A, 1giq:B, 1gir:A, 4h0t:A, 4h0v:A, 4h0x:A, 4h0y:A
20 8i4y:A 1687 28 0.1224 0.0071 0.4286 7.7 8i4y:B, 8i4z:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218