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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MPDTAINPRDPVFVSYRHSDGIALAAELTWLLRAAGIPVWRDVDDLPPGDTDARLQQAIDEGISGAVIIITPQIADSRVV
REVEAPRLLRLHRSSPQFALGIVNAIQTSTGVVDYDAPDRVLGMERPELRSVDQKSASRLGLVTMARQMLWHRIAAIRPL
LSASGGELRLSLQTRNTPQVYDRTDADLDIRIRPSAHEKLPSAHGLEDFAETAQFLPDAVTRAGANGVRIEGGAHLSVSI
AIGAAIPSTRVGPMTVVDGRGVHWVSSTEPQLPDEPRLRIVRESTIPSTAPAPGRPDVAAYIDLQHPRSDAAFDNYLTEH
AAELVAWQHLAPTRTGLLDAADGGTIAAEAVAHIRELSMTNGNAVVHLMVRGPFGLAVLIGRLTNTLRVVAYEWTDSDAP
DGTFMPPRYEPIVQLRASTPAGVIERVIVADAE

The query sequence (length=433) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7qqk:A 433 433 1.0000 1.0000 1.0000 0.0 7qqk:B, 7qqk:C, 7qqk:D
2 7cm7:A 620 66 0.0508 0.0355 0.3333 0.008 7cm6:A, 7cm6:B, 7cm6:C, 7cm6:D, 7cm6:E, 7cm6:F, 7cm6:G, 7cm6:H, 7cm7:B, 7cm7:C, 7cm7:D, 7cm7:E, 7cm7:F, 7cm7:G, 7cm7:H
3 7anw:A 645 66 0.0508 0.0341 0.3333 0.009 7anw:B, 7anw:C, 7anw:D, 7anw:E, 7anw:F, 7anw:G, 7anw:H, 8d0c:A, 8d0c:B, 8d0d:A, 8d0d:B, 8d0e:A, 8d0e:B, 8d0f:A, 8d0f:B, 8d0g:A, 8d0g:B, 8d0h:A, 8d0h:B, 8d0i:A, 8d0i:B, 7djt:A, 7djt:B, 7djt:C, 7djt:D, 7djt:E, 7djt:F, 7djt:G, 7djt:H, 8gni:A, 8gnj:A, 7nag:A, 7nag:B, 7nah:A, 7nah:B, 7nai:A, 7nai:B, 7naj:A, 7naj:B, 7nak:D, 7nak:C, 7nak:H, 7nak:G, 7nak:B, 7nak:A, 7nak:E, 7nak:F, 7nal:A, 7nal:B, 7nal:C, 7nal:D, 7nal:E, 7nal:F, 7nal:G, 7nal:H, 6o0q:A, 6o0q:B, 8p2l:A, 8p2l:B, 8p2l:C, 8p2l:D, 8p2l:E, 8p2l:F, 8p2l:G, 8p2l:H, 6zfx:A, 6zfx:B, 6zfx:C, 6zfx:D, 6zfx:E, 6zfx:F, 6zfx:G, 6zfx:H
4 8zkc:A 346 61 0.0485 0.0607 0.3443 0.16
5 3kb1:A 243 47 0.0462 0.0823 0.4255 0.81 3kb1:B, 6oby:A, 6oby:B
6 7uxu:A 134 90 0.0577 0.1866 0.2778 2.2 7uxu:B, 7uxu:C, 7uxu:D
7 7k5b:B 4524 151 0.0831 0.0080 0.2384 2.4 8bx8:B, 7k58:B, 7kek:B
8 8qnn:A 259 79 0.0554 0.0927 0.3038 2.5
9 7yca:O 96 65 0.0393 0.1771 0.2615 3.2
10 3ssn:B 350 167 0.0947 0.1171 0.2455 4.6
11 5lqw:Q 791 82 0.0531 0.0291 0.2805 6.2
12 3c37:A 223 77 0.0531 0.1031 0.2987 7.3 3c37:B
13 8dgc:A 2028 25 0.0254 0.0054 0.4400 7.4 8dgc:B, 8dgc:C, 8dgc:D
14 6g2g:B 273 61 0.0439 0.0696 0.3115 9.1 6g2g:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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