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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNYWWVSQKQTFKQEFEGGYMWSPKENKNGTQSHYYNNMTLVQPGDVVFSFANGLILSVGIARSHAYSYNKPTEFGVAGA
DWANDGWKIDLEYHLVENKIRPKAHIDFIRPYLPQKYSPLQDNGNGNQAYLFSVPHELASKVVELIGSEAEEVIFGFADT
TEITTTADAIECQISNDASIDETEKHQLVKSRRGQGIFRSRLEQVESRCRVTGVQLKNHLIASHIKPWAVSNNQERLDGH
NGLLLAPHVDHLFDKGFISFEDNGEMIVSEKLNLDVLKAWSISQGNYGYFSKQQQEYMCYHRENVFKKL

The query sequence (length=309) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6yjb:A 309 309 1.0000 1.0000 1.0000 0.0 6ykf:A, 6ymg:A, 6ymg:B
2 2hhl:C 184 94 0.0777 0.1304 0.2553 0.32 2hhl:A, 2hhl:D
3 7ane:aa 1514 33 0.0388 0.0079 0.3636 2.3
4 1t9z:A 181 82 0.0712 0.1215 0.2683 3.5 6du2:A, 6du2:B, 6du3:A, 6du3:B, 2ghq:A, 2ghq:B, 2ght:A, 2ght:B, 3l0b:A, 3l0c:A, 3l0c:B, 3l0y:A, 3l0y:B, 3pgl:A, 3pgl:B, 1ta0:A, 4ygy:A, 4ygy:B, 4yh1:A, 4yh1:B
5 1ghe:B 171 49 0.0453 0.0819 0.2857 4.4 1ghe:A, 1j4j:A, 1j4j:B
6 6tgh:A 410 83 0.0744 0.0561 0.2771 7.3 6tgh:C, 6tgh:B, 6tgh:D, 6ti1:A, 6ti1:C, 6ti3:A, 6ti3:C, 6ti3:B, 6ti3:D, 6ti4:A, 6ti4:C, 4wxf:A, 4wxf:C, 4wxg:A, 4wxg:C, 6yrw:A, 6yrw:C, 6yrw:B, 6yrw:D
7 1akl:A 470 52 0.0550 0.0362 0.3269 8.6 1jiw:P, 1kap:P, 3vi1:A, 3vi1:B
8 5jph:B 144 58 0.0615 0.1319 0.3276 9.2 5jph:A, 5jph:C
9 2fj0:A 530 90 0.0615 0.0358 0.2111 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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