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BioLiP
>protein
MNVTPLDELQWKSPEWIQVFGLRTENVLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNAFAYVDPARRQILFKYPMYMQ
LEEELMKLDGTEYVLSSVREPDFWVIRKQRRTNNSGVGSAKGPEIIPLQDYYIIGANIYQSPTIFKIVQSRLMSTSYHLN
STLESLYDLI

The query sequence (length=170) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4gwq:G 170 170 1.0000 1.0000 1.0000 1.80e-126 5sva:M, 7ui9:f, 7uif:f, 7uig:f, 7uio:Af, 7uio:Bf
2 3rj1:G 103 78 0.4412 0.7282 0.9615 2.33e-49 3rj1:N, 3rj1:U
3 3rj1:G 103 25 0.1471 0.2427 1.0000 1.57e-09 3rj1:N, 3rj1:U
4 8t9d:C 178 158 0.2941 0.2809 0.3165 2.33e-20 8t1l:C
5 5znj:A 563 70 0.1059 0.0320 0.2571 2.1 5znk:A
6 2cyy:A 151 114 0.1706 0.1921 0.2544 3.7 2e1c:A, 2zny:A, 2zny:C, 2zny:E, 2zny:B, 2zny:D, 2zny:F, 2zny:H, 2zny:G, 2znz:A, 2znz:B, 2znz:C, 2znz:D, 2znz:E, 2znz:F, 2znz:G, 2znz:H
7 1xvx:A 311 101 0.1588 0.0868 0.2673 4.4
8 8fs6:G 298 41 0.0882 0.0503 0.3659 8.6
9 6ct7:L 212 48 0.0765 0.0613 0.2708 9.4 6ct7:B
10 7jpo:A 352 91 0.1294 0.0625 0.2418 9.5 7jpr:A, 7jps:A, 5uj7:A, 5uj7:B, 5ujm:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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