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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNVTGAGLTHVKDFHSDEMRVFRGGLRHIADKQGNLIYGSVNSSVRYYHDKMSYERGFIQHSRSPSNQFINFHFMLGGFR
TYVLERFFKQVWYRRNIRTFWFPVLISYTSGCITMRMYDNNCYDYFYFS

The query sequence (length=129) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8gym:qH 129 129 1.0000 1.0000 1.0000 2.83e-95 8gym:qh, 8gym:QH, 8gym:Qh, 7tgh:3H
2 4dr0:B 291 42 0.0930 0.0412 0.2857 0.24 4dr0:A
3 8hev:H 417 68 0.1550 0.0480 0.2941 0.45 8hev:A, 8hev:B, 8hev:C, 8hev:U, 8hev:G, 8hev:J, 8hev:L, 8hev:V, 8hev:I, 8hev:K, 8hev:M
4 8tzc:A 872 51 0.0930 0.0138 0.2353 0.49
5 4c30:F 632 36 0.1085 0.0222 0.3889 2.5 4c30:A
6 4c2u:A 658 36 0.1085 0.0213 0.3889 2.5 4c2t:A, 4c2t:B, 4c2t:C, 4c2t:D, 4c2u:D, 4c30:I, 4c30:D
7 5epa:A 258 100 0.1550 0.0775 0.2000 2.9 5epa:B, 5epa:C, 5epa:D, 5epa:E, 5epa:F
8 4ovw:A 400 60 0.1395 0.0450 0.3000 4.6 1ovw:A, 1ovw:B, 1ovw:C, 1ovw:D, 2ovw:A, 2ovw:B, 2ovw:C, 2ovw:D, 4ovw:B
9 8act:A 873 70 0.1628 0.0241 0.3000 4.8 8act:B, 9f6c:B, 8qyp:A, 8qyq:A, 8qyq:B, 8qyr:B
10 4pa0:A 974 70 0.1628 0.0216 0.3000 7.1 4db1:A, 4db1:B, 8efe:A, 8efh:A, 9f6c:A, 6fsa:A, 6fsa:B, 5n69:A, 5n69:B, 5n6a:A, 8qyu:A
11 4pa0:B 920 70 0.1628 0.0228 0.3000 7.7 8qyu:B
12 1lee:A 331 22 0.0620 0.0242 0.3636 8.3 2bju:A, 4cku:A, 4cku:B, 4cku:C, 4cku:D, 4cku:E, 4cku:F, 2igx:A, 2igy:A, 2igy:B, 1lf2:A, 1lf3:A, 1m43:A, 1m43:B, 1me6:A, 1me6:B, 7qyh:A, 2r9b:A, 2r9b:B, 1sme:A, 1sme:B, 7ve0:A, 7ve0:B, 7ve2:A, 1w6h:A, 1w6h:B, 1w6i:A, 1w6i:C, 1xdh:A, 1xdh:B, 1xe5:A, 1xe5:B, 1xe6:A, 1xe6:B, 4y6m:A, 4y6m:C, 4y6m:B, 4ya8:A, 4ya8:B, 4ya8:C, 4ya8:D, 5yia:A, 5yib:A, 5yic:A, 5yid:A, 5yie:A, 4z22:A, 4z22:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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