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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNVPKARLLKVAELSAKIFDQNFNPSGIRTGSKILNERLKGPSVASYYGNPDILKFRHLKTLYPDIEFVDLEEQYRLSMV
EAKKRRGKGAPKKMKKDA

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8om2:X 98 98 1.0000 1.0000 1.0000 1.34e-68 8d8k:X, 8d8l:X, 5mrc:XX, 5mre:XX, 5mrf:XX, 8om3:X, 8om4:X
2 6yw5:YY 99 94 0.3980 0.3939 0.4149 5.17e-17 6ywe:YY, 6ywx:YY, 6ywy:YY
3 6xyw:Bx 79 82 0.3265 0.4051 0.3902 5.04e-08
4 8gc2:D 760 59 0.1939 0.0250 0.3220 1.0 8f0o:B, 8gc2:A, 8gc2:B, 8gc2:C, 8gc3:B, 8gc3:C, 8gc3:D, 8gc3:A, 8gc4:A, 8gc4:B, 8gc4:C, 8gc4:D, 8gc5:A, 8gc5:B, 8gc5:C, 8gc5:D, 5kuf:A, 5kuf:B, 5kuf:C, 5kuf:D
5 9b36:A 842 59 0.1939 0.0226 0.3220 1.0 9b35:A, 9b35:B, 9b35:C, 9b35:D, 9b36:C, 9b36:D, 9b36:B, 9b37:A, 9b37:D, 9b37:B, 9b37:C, 9b39:A, 9b39:B, 9b39:C, 9b39:D, 8fwq:A, 8fwq:D, 8fwq:B, 8fwq:C, 8fws:A, 8fws:D, 8fws:B, 8fws:C, 8fwu:A, 8fwu:B, 8fwu:C, 8fwu:D, 8fww:A, 8fww:D, 8fww:B, 8fww:C, 3h6g:A, 3h6g:B, 3h6h:A, 3h6h:B
6 2fdc:A 505 37 0.1327 0.0257 0.3514 3.3
7 7qe7:K 531 53 0.1327 0.0245 0.2453 3.6 5a31:J, 5a31:K, 5g04:J, 5g04:K, 5g05:J, 5g05:K, 9gaw:Q, 9gaw:K, 3hym:B, 3hym:D, 3hym:F, 3hym:H, 3hym:J, 3hym:L, 5lcw:J, 5lcw:K, 8pkp:Q, 8pkp:K, 6q6g:Q, 6q6g:K, 6q6h:Q, 6q6h:K, 7qe7:Q, 8s4g:Q, 8s4g:K, 6tlj:J, 6tlj:K, 6tm5:J, 6tm5:K, 6tnt:J, 6tnt:K, 4ui9:J, 4ui9:K
8 4n0w:A 416 35 0.1531 0.0361 0.4286 4.0 4n0w:B, 4n0w:C, 4n0w:D, 4ot8:A, 4ot8:C, 4ot8:B, 4ot8:D, 4otl:A, 4otl:B, 4otl:D, 4otl:C
9 8qbb:A 271 33 0.1122 0.0406 0.3333 4.9 8qbb:J, 8qbb:F, 8qbb:B, 8qbb:C, 8qbb:I, 8qbb:D, 8qbb:E, 8qbb:K, 8qbb:L, 8qbb:G, 8qbb:M, 8qbb:H, 8qbb:N, 8qbd:A, 8qbd:B, 8qbd:C, 8qbd:I, 8qbd:D, 8qbd:J, 8qbd:E, 8qbd:K, 8qbd:F, 8qbd:L, 8qbd:G, 8qbd:M, 8qbd:H, 8qbd:N, 8qbf:A, 8qbf:B
10 5d4c:K 231 38 0.1429 0.0606 0.3684 6.2 2a68:A, 2a68:B, 2a68:K, 2a68:L, 2a69:A, 2a69:B, 2a69:K, 2a69:L, 5d4c:B, 5d4c:L, 5d4d:L, 5e17:B, 5e18:B, 7eh0:B, 7eh1:B, 4g7h:B, 1iw7:A, 1iw7:B, 1iw7:K, 1iw7:L, 6kqd:B, 6kqd:K, 6kqe:B, 6kqf:B, 6kqg:B, 6kqh:B, 6kqm:B, 6kqn:B, 6l74:B, 6lts:B, 7mlb:B, 7mli:B, 7mlj:B, 4oin:B, 4oip:B, 7rdq:B, 1smy:A, 1smy:B, 5vo8:B, 8w8n:B, 8w8o:B, 8w8p:B, 5x21:A, 5x22:B, 5x22:L
11 7qp6:t 356 59 0.1531 0.0421 0.2542 6.8 7qp7:t, 6ybv:t, 6zmw:t
12 3i74:A 642 58 0.1429 0.0218 0.2414 7.2 3i74:B
13 8qzz:A 433 59 0.1531 0.0346 0.2542 7.9 7a09:Y, 6zp4:Y
14 8pj1:t 472 59 0.1531 0.0318 0.2542 8.2 7d43:P, 6fec:S, 5k0y:S, 6k71:P, 6k72:P, 8oz0:E, 8pj2:t, 8ppl:It, 6yal:B, 6yam:B, 6yan:B
15 5m11:A 748 67 0.2347 0.0307 0.3433 9.2
16 8d0b:B 362 46 0.1429 0.0387 0.3043 9.3 8d0k:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218