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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNTPEHMTAVVQRYVAALNAGDLDGIVALFADDATVEDEPRSGTAAIREFYANSLKLPLAVELTQEVRAVANEAAFAFTV
SFEYQGRKTVVAPIDHFRFNGAGKVVSMRALFGEKNIHAG

The query sequence (length=120) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1buq:A 125 124 0.9833 0.9440 0.9516 8.21e-82 1buq:B, 3m8c:B, 3m8c:D, 3m8c:C, 3myt:A, 3myt:C, 3nbr:A, 3nhx:A, 3nuv:A, 3nuv:B, 1ogz:A, 1ohp:A, 1ohp:B, 1ohp:C, 1ohp:D, 1ohs:A, 1ohs:B, 1ohs:C, 3ov4:A, 3ov4:B, 3ov4:C, 1qjg:A, 1qjg:B, 1qjg:C, 1qjg:D, 1qjg:E, 1qjg:F, 5ugi:A
2 6uae:C 125 123 0.9333 0.8960 0.9106 3.16e-76 6uae:A, 6uae:B, 6uae:D
3 6uad:A 121 121 0.8500 0.8430 0.8430 1.03e-68
4 6p44:B 117 120 0.3667 0.3761 0.3667 6.98e-13 6p44:A
5 7ry4:B 130 125 0.3333 0.3077 0.3200 1.07e-12 5ai1:A, 6c17:A, 6c1j:A, 6c1x:A, 3cpo:A, 1cqs:A, 1cqs:B, 1e3r:A, 1e3r:B, 1e3v:A, 1e3v:B, 3fzw:A, 3fzw:B, 5g2g:A, 5g2g:B, 1gs3:A, 2inx:A, 3ipt:A, 3ipt:B, 3ipt:C, 3ipt:D, 5kp1:A, 5kp1:B, 5kp1:C, 5kp1:D, 5kp3:A, 5kp3:B, 5kp4:B, 1ogx:A, 1ogx:B, 1oh0:A, 1oh0:B, 1oho:A, 3ows:A, 3ows:B, 3ows:C, 3ows:D, 3owu:A, 3owu:B, 3owu:C, 3owu:D, 3owy:A, 3owy:B, 3owy:C, 3owy:D, 3owy:E, 3owy:H, 2pzv:A, 2pzv:B, 2pzv:C, 2pzv:D, 7rxf:A, 7ry4:A, 3t8n:D, 3t8n:F, 6tzd:B, 6tzd:A, 6u4i:A, 6u4i:B, 6ubq:A, 6ubq:B, 6ucn:A, 6ucn:B, 6ucy:B, 6ucy:A, 6ufs:B, 3vgn:A, 3vgn:B, 1w6y:A
6 4cdl:A 126 123 0.2667 0.2540 0.2602 1.65e-06
7 8r2b:A 130 113 0.2833 0.2615 0.3009 9.47e-05 8r2e:A
8 5aih:A 125 64 0.2083 0.2000 0.3906 0.009 5aih:B, 5aii:F
9 3f8h:A 137 27 0.1000 0.0876 0.4444 0.11
10 5aig:A 124 110 0.2167 0.2097 0.2364 0.18 5aig:B
11 5ui2:A 316 55 0.1417 0.0538 0.3091 0.22 5ui2:B
12 6pq1:A 320 53 0.1333 0.0500 0.3019 0.41
13 6isl:A 120 25 0.1250 0.1250 0.6000 0.56 6isl:B
14 4rzm:B 283 39 0.1333 0.0565 0.4103 0.59 3rga:A, 4rzm:A
15 5hgr:A 315 46 0.1250 0.0476 0.3261 0.59 5hgr:B
16 2z77:D 130 116 0.2500 0.2308 0.2586 1.7
17 7zsg:1 314 55 0.1417 0.0541 0.3091 2.3 3mg1:A, 3mg1:B, 3mg2:A, 3mg2:B, 3mg3:A, 3mg3:B, 7sc9:BH, 7sc9:CQ, 7sc9:DI, 7sc9:EA, 7scb:BH, 7scc:AS, 7scc:BP, 6t6k:A, 6t6m:A, 6t6o:A, 8to2:B, 8tpj:B, 5tuw:A, 5tuw:B, 5tuw:C, 5tuw:D, 5tuw:E, 5tuw:F, 5tux:A, 5tv0:A, 4xb4:A, 4xb4:B, 4xb5:A, 7zsf:A, 7zsh:1, 7zsi:1, 7zsj:1, 7zxv:A
18 7ytf:A 309 43 0.1167 0.0453 0.3256 3.3
19 7mq8:NN 42 26 0.0833 0.2381 0.3846 3.5 7mq9:NN
20 8p4q:E 390 76 0.1750 0.0538 0.2763 3.6 8p37:A, 8p4q:A, 8p4q:B, 8p4q:C, 8p4q:D, 8p4q:F, 8p4q:G, 8p4q:H
21 7ekr:B 309 53 0.1417 0.0550 0.3208 3.6 7ekr:A
22 8xku:B 845 51 0.1250 0.0178 0.2941 3.7 8xkv:B
23 2fj0:A 530 53 0.1167 0.0264 0.2642 3.9
24 7w02:A 1566 22 0.0833 0.0064 0.4545 4.0
25 5wje:A 159 37 0.1167 0.0881 0.3784 6.8 5wjd:A
26 1v83:A 245 55 0.1500 0.0735 0.3273 9.6 1v83:B, 1v84:A, 1v84:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218