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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNTGIIDLFDNHVDSIPTILPHQLATLDYLVRTIIDENRSVLLFHIMGSGKTIIALLFALVASRFKKVYILVPNINILKI
FNYNMGVAMNLFNDEFIAENIFIHSTTSFYSLNYNDNVINYNGLSRYNNSIFIVDEAHNIFGNNTGELMTVIKNKNKIPF
LLLSGSPITNTPNTLGHIIDLMSEETIDFGEIISRGKKVIQTLLNERGVNVLKDLLKGRISYYEMPDKDLPTIRYHGRKF
LDTRVVYCHMSKLQERDYMITRRQLCYHEMFDKNMYNVSMAVLGQLNLMNNLDTLFQEQDKELYPNLKINNGVLYGEELV
TLNISSKFKYFINRIQTLNGKHFIYFSNSTYGGLVIKYIMLSNGYSEYNGSQGTNPHMINGKPKTFAIVTSKMKSSLEDL
LDVYNSPENDDGSQLMFLFSSNIMSESYTLKEVRHIWFMTIPDTFSQYNQILGRSIRKFSYADISEPVNVYLLAAVYSDF
NDEVTSLNDYTQDELINVLPFDIKKLLYLKFKTKETNRIYSILQEMSETYSLPPHPSIVKVLLGELVRQFFYNNSRIKYN
DTKLLKMVTSVIKNKEDARNYIDDIVNGHFFVSNKVFDKSLLYKYENDIITVPFRLSYEPFVWGVNFRKEYNVVSSP

The query sequence (length=637) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7amv:W 637 637 1.0000 1.0000 1.0000 0.0
2 6gej:M 688 193 0.0754 0.0698 0.2487 0.075 6gen:M
3 7qjt:A 267 68 0.0314 0.0749 0.2941 0.094
4 7epu:B 748 192 0.0706 0.0602 0.2344 0.11 8b0a:K, 7enn:K, 7otq:K
5 7bm0:A 427 160 0.0659 0.0984 0.2625 0.16 7blv:A, 7nxu:A
6 6ryr:W 708 201 0.0738 0.0664 0.2338 0.40 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
7 7r7j:B 574 163 0.0628 0.0697 0.2454 0.52 8h5y:B, 8h5y:A, 8h5z:B, 8h5z:A, 6jde:B, 6jde:A, 7r7j:A
8 8b3f:b 534 161 0.0628 0.0749 0.2484 0.62 8b3d:b, 7oo3:b, 7oob:b, 7oop:b, 7opc:b, 7opd:b
9 2v1u:A 382 68 0.0330 0.0550 0.3088 0.64
10 2gmh:A 581 67 0.0298 0.0327 0.2836 0.70 2gmh:B, 2gmj:A, 2gmj:B
11 3tgn:B 146 66 0.0314 0.1370 0.3030 0.85 3tgn:A
12 8jbw:A 364 52 0.0283 0.0495 0.3462 0.89
13 7crc:B 1112 47 0.0298 0.0171 0.4043 1.0 7crc:A, 7crc:C, 7crc:D, 7xoz:A, 7xoz:B
14 8a2c:A 268 37 0.0267 0.0634 0.4595 1.7 8a2c:B
15 4a15:A 596 50 0.0298 0.0319 0.3800 2.0 5h8w:A, 2vsf:A
16 5zrq:A 263 41 0.0251 0.0608 0.3902 2.0 7cef:A, 7cef:B, 7ceh:A, 7cts:A, 8ibl:A, 8ibl:B, 8ibm:A, 8ibm:B, 4wfj:A, 4wfk:A, 5zno:A, 5zno:B, 5zrr:A, 5zrs:A
17 5j60:A 316 56 0.0267 0.0538 0.3036 2.1 5j60:D, 5j60:B, 5j60:C, 6xtf:A, 6xtf:B
18 6ne3:W 461 90 0.0345 0.0477 0.2444 2.4 8v4y:W, 8v6v:W, 8v6v:X, 8v7l:W
19 7f5x:A 236 34 0.0157 0.0424 0.2941 2.7 7f5x:B, 7f5x:C, 7f5x:D
20 8us3:A 552 63 0.0267 0.0308 0.2698 3.4 8us1:A
21 6fvt:H 426 62 0.0314 0.0469 0.3226 3.5 6ef0:H, 6ef1:H, 6ef2:H, 6fvu:H, 6fvv:H, 6fvw:H, 6fvx:H, 6fvy:H
22 7qo4:H 391 62 0.0314 0.0512 0.3226 3.6 6ef3:H, 5mp9:H, 5mpa:H, 5mpb:H, 5mpc:H, 7qo5:H, 7qo6:H
23 8xho:A 262 36 0.0235 0.0573 0.4167 4.2 8xho:B
24 8rbx:k 552 86 0.0377 0.0435 0.2791 4.3 7pks:k, 8rbz:k
25 5lui:A 264 48 0.0220 0.0530 0.2917 4.3 5luk:A, 5lul:A, 7xtt:B, 7xtv:A, 7xtv:B
26 7ycx:K 590 95 0.0392 0.0424 0.2632 4.6 7cun:K, 8r22:C, 8r23:C, 8r2d:C, 8rc4:k, 8uib:K
27 8asa:B 282 66 0.0330 0.0745 0.3182 5.6 8asa:A, 8asa:C, 8asa:D, 8asa:E, 8asa:F, 8asa:G, 8asa:H, 8avq:A, 8avq:B, 8avq:C, 8avq:D, 8q8i:A
28 5xf9:D 455 52 0.0251 0.0352 0.3077 6.3 5xf9:H, 5xfa:D, 5xfa:H
29 5eix:J 679 81 0.0330 0.0309 0.2593 8.1 5eix:G, 7lhz:D
30 3pmp:A 163 76 0.0283 0.1104 0.2368 9.9 3pmp:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218