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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNSVTISHAPYTITYHDDWEPVMSQLVEFYNEVASWLLRDETSPIPDKFFIQLKQPLRNKRVCVCGIDPYPKDGTGVPFE
SPNFTKKSIKEIASSISRLTGVIDYKGYNLNIIDGVIPWNYYLSCKLGETKSHAIYWDKISKLLLQHITKHVSVLYCLGK
TDFSNIRAKLESPVTTIVGYHPAARDHQFEKDRSFEIINVLLELDNKTPINWAQGFIY

The query sequence (length=218) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2owq:B 224 218 0.9725 0.9464 0.9725 7.22e-157 8j86:B, 8j8f:B, 8j8g:B, 4lzb:A, 4lzb:B, 4lzb:C, 4lzb:D, 4lzb:E, 4lzb:F, 4lzb:G, 4lzb:H, 4lzb:I, 4lzb:J, 4lzb:K, 4lzb:L, 2owq:A, 4qcb:B, 4qcb:A, 8wpe:C, 8wpf:C, 8wpk:C, 8wpp:C, 4ygm:B, 4ygm:A, 4yig:A, 4yig:E, 4yig:I
2 3ufm:A 230 219 0.2431 0.2304 0.2420 1.90e-04 4uqm:A
3 1flz:A 228 170 0.2018 0.1930 0.2588 0.024 2eug:A, 3eug:A, 5eug:A, 3uf7:A
4 2p1r:A 290 37 0.0734 0.0552 0.4324 0.73 2p1r:B, 2p1r:C, 2p1r:D
5 6ks1:A 286 30 0.0550 0.0420 0.4000 1.2 5lwy:A, 5lx9:A, 5lxa:A, 6yx9:A, 6yxd:A, 6yxf:A, 6yxg:A
6 5ayr:A 224 173 0.1651 0.1607 0.2081 1.6 5ayr:C, 1emh:A, 1emj:A, 3fcf:A, 3fci:A, 3fck:B, 3fcl:A, 3fcl:B, 2hxm:A, 2oxm:A, 2oyt:A, 1q3f:A, 4skn:E, 1ssp:E, 2ssp:E, 6vba:A
7 6ks0:A 286 63 0.0734 0.0559 0.2540 3.1 6krz:A, 6krz:B, 6krz:C, 5lxg:A
8 4bed:A 1664 95 0.1376 0.0180 0.3158 4.6 4bed:C
9 5oyn:A 589 84 0.1101 0.0407 0.2857 5.1 5oyn:B, 5oyn:C, 5oyn:D
10 3a1s:A 255 30 0.0550 0.0471 0.4000 6.0 3a1s:B, 3a1t:A, 3a1u:A, 3a1u:B
11 8ttc:D 299 36 0.0459 0.0334 0.2778 7.4 8r02:D, 8r0j:C
12 1duv:G 333 34 0.0505 0.0330 0.3235 9.1 1duv:H, 1duv:I, 2otc:A, 2otc:B, 2otc:C, 2otc:D, 2otc:E, 2otc:F, 2otc:G, 2otc:H, 2otc:I
13 3hbn:A 282 84 0.0780 0.0603 0.2024 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218