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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MNSRGIWLSYVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGMYIFLHTVKGTPFETPDQGKARLLTHWEQMDYGVQFT
ASRKFLTITPIVLYFLTSFYTKYDQIHFVLNTVSLMSVLIPKLPQLHGVR

The query sequence (length=130) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7yiu:D 153 130 1.0000 0.8497 1.0000 8.58e-93 7cqi:A, 7cqk:A, 6m4o:A, 7yiy:D
2 7yjk:D 156 126 0.4154 0.3462 0.4286 8.84e-28 7yjk:H, 7yjm:D, 7yjn:D, 7yjo:D
3 8iaj:D 182 132 0.4000 0.2857 0.3939 8.50e-20 8iaj:H, 8iam:D, 8iam:H, 8qof:A, 8qof:E, 8qog:A
4 8c80:A 184 131 0.3769 0.2663 0.3740 1.09e-19 8c81:A, 8c82:A, 8c82:E
5 8h1r:D 789 59 0.1231 0.0203 0.2712 0.63 8h1r:A, 5iva:A
6 7rjt:A 902 124 0.2385 0.0344 0.2500 1.7 7rjt:B, 7rjt:C, 7rjt:D, 7rk6:A, 7rk6:B, 7rk6:C, 7rk6:D, 5tj6:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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