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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNSGRANQRSKPMTGLINDKKEKIDAYLPRKCDWSNKLIFSNDQSSVQIAIAEVGENGQATGSKTNVVLCGSVRSKGEAH
IALENILRERGLYPIQE

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4bts:AZ 97 97 1.0000 1.0000 1.0000 2.48e-69 4bts:BZ, 4bts:CZ, 4bts:DZ, 4v5o:AZ, 4v5o:BZ
2 6az1:Y 88 82 0.3505 0.3864 0.4146 6.80e-20 8rxh:SY, 8rxx:SY
3 7qix:L 82 73 0.2887 0.3415 0.3836 1.77e-16 7qiz:BA
4 8ova:AR 89 82 0.3299 0.3596 0.3902 1.25e-15
5 5xxu:V 80 75 0.2887 0.3500 0.3733 2.83e-15
6 4v3p:ST 82 73 0.2990 0.3537 0.3973 4.70e-15
7 8c3a:X 87 76 0.3299 0.3678 0.4211 6.41e-15 8c3a:DI, 8cq7:X, 8cq7:DI, 8cqw:X, 8cqw:DI, 8cre:X, 8cre:DI, 8oeq:X, 8oeq:DI, 7pzy:W, 7q08:W, 7q0f:W, 7q0p:W, 7q0r:W, 8q5i:W
8 7ase:g 83 82 0.3196 0.3735 0.3780 8.96e-15
9 8bqd:a 87 76 0.3196 0.3563 0.4079 5.52e-14 8bn3:D1, 8bqx:a, 8c83:a, 8cah:a, 8ccs:x, 8cf5:x, 8cku:x, 8cmj:x, 5dat:d1, 5dge:d1, 5dgv:d1, 6eml:a, 8eub:BV, 8evp:BV, 8evq:BV, 8evr:BV, 8evs:BV, 8evt:BV, 8ewb:BV, 8ewc:BV, 6fai:V, 6fyy:V, 6gq1:AL, 6gqv:AL, 6gsm:V, 6gsn:V, 8i7j:V, 5it7:V, 5it9:V, 3j77:21, 3j78:21, 3j80:V, 5juu:SB, 8k2d:SV, 8k82:SV, 5m1j:V2, 7mpi:BV, 7mpj:BV, 7n8b:BV, 5ndv:d1, 7nrd:Sa, 5obm:d1, 7osa:eS21, 7osm:eS21, 6q8y:a, 6rbd:V, 6rbe:V, 8rw1:V, 6s47:BW, 8s8d:V, 8s8e:V, 8s8f:V, 8s8i:V, 6snt:V, 6sv4:a, 6t4q:SV, 6t7t:SV, 6tnu:a, 4u3n:D1, 4u4n:D1, 4u4o:D1, 4u4y:D1, 4u50:d1, 4u53:D1, 4v6i:AT, 4v8y:AV, 4v8z:AV, 4v92:BV, 6xiq:AL, 6xir:AL, 6z6j:SV, 6z6k:SV, 7zrs:AV, 7zux:DV
10 8r6f:V 81 73 0.2887 0.3457 0.3836 8.03e-14 8ip8:cb, 8ip9:cb, 8ipa:cb
11 8auv:G 83 74 0.2680 0.3133 0.3514 3.99e-13 8b2l:G1
12 7syl:W 83 76 0.2680 0.3133 0.3421 4.65e-12 6gz3:BV, 6olz:BV, 6om0:SV, 6om7:SV, 7oyb:V2, 7tor:AS21, 7wtw:V, 7wtz:V
13 6xu8:AV 82 76 0.2577 0.3049 0.3289 9.39e-12
14 3j7a:Z 72 70 0.2371 0.3194 0.3286 3.59e-09 3jbn:Z, 3jbp:Z, 6okk:Z, 8tpu:SZ
15 8r3o:B 667 46 0.1753 0.0255 0.3696 0.95 8r3o:A, 8r3o:C, 8r3o:D
16 6j7b:A 249 25 0.1134 0.0442 0.4400 1.9 6j4u:A, 6j8f:B, 6j8n:B, 6j8n:D, 6j8o:B, 6j91:B, 6j9h:B, 6j9h:D, 6k81:A, 6lpg:A, 6nvq:C, 6ocg:A, 6och:A, 6och:C
17 5ja2:A 1238 23 0.1237 0.0097 0.5217 2.0 5ja1:A, 5t3d:A
18 8q5w:G 281 75 0.1959 0.0676 0.2533 7.0 8q5w:A, 8q5w:B, 8q5w:C, 8q5w:D, 8q5w:E, 8q5w:F, 8q5w:H, 8q5w:I, 8q5w:J, 8q5w:K, 8q5w:L
19 6rtg:A 503 61 0.2165 0.0417 0.3443 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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