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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNRQIVRSALFVPATRPERIPKALASGADRVIVDLEDAVEEGLKVEARANLRRFLVDTPEARVLVRINAAEHPGHADDLA
LCRDHAGVIGLLLPKVESAAQVRHAAVASGKPVWPIVESARGLAALGEIAAAAGVERLSFGSLDLALDLDLNSGSNAAEQ
ILGHARYALLLQTRLAGLAPPLDGVYPAIQNRAGLVEAVRFARDMGFGGLLCIHPSQVEPIHQTLMPSPAELEWARRVAE
AGASGAGVFVVDGEMVDAPVLGRARRLLERAGEGG

The query sequence (length=275) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8khl:A 275 275 1.0000 1.0000 1.0000 0.0 8khl:B, 8khl:C, 8wco:A, 8wco:C, 8wco:B
2 6aq4:B 268 267 0.4073 0.4179 0.4195 7.01e-34 6aq4:A, 6aq4:C, 6arb:A, 6arb:B, 6arb:C, 6as5:A, 6as5:C, 6as5:B, 6chu:A, 6cj3:A, 6cj4:A, 1u5v:A, 1z6k:A
3 5ugr:A 323 309 0.3273 0.2786 0.2913 9.37e-22
4 5vxc:A 301 289 0.2873 0.2625 0.2734 7.20e-21 5vxo:A, 5vxo:B, 5vxo:C
5 1sgj:A 231 232 0.2582 0.3074 0.3060 2.30e-18 1sgj:B, 1sgj:C
6 4l9y:C 316 300 0.3091 0.2690 0.2833 9.15e-18 4l9y:A, 4l9y:B, 4l9y:D, 4l9y:E, 4l9y:F, 4l9z:A, 4l9z:B, 4l9z:C, 4l9z:D, 4l9z:E, 4l9z:F
7 4l80:C 347 290 0.2582 0.2046 0.2448 7.04e-09 6kkh:C, 6kkh:F, 6kkh:I, 6kkh:L, 4l80:A, 4l80:B, 4l80:D, 4l80:F, 4l80:E
8 3r4i:A 321 205 0.2000 0.1713 0.2683 6.64e-04 3r4i:B, 3r4i:C, 3r4i:D, 3r4i:E, 3r4i:F
9 2j1p:A 276 68 0.0982 0.0978 0.3971 2.7
10 5xxz:B 1310 122 0.1273 0.0267 0.2869 3.4
11 5l6l:D 84 59 0.0727 0.2381 0.3390 3.4 5l6l:A, 5l6l:E, 5l6l:H
12 5xya:A 1358 99 0.1091 0.0221 0.3030 4.4 5xxz:A
13 7edd:A 1394 99 0.1091 0.0215 0.3030 4.4 5xyr:A
14 6vjb:A 1346 99 0.1091 0.0223 0.3030 4.6
15 2ywr:A 216 59 0.0800 0.1019 0.3729 4.6
16 3cqj:A 276 87 0.0764 0.0761 0.2414 6.8 3cqj:B, 3cqk:A, 3cqk:B
17 1izc:A 299 42 0.0582 0.0535 0.3810 7.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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