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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNRQELITEALKARDMAYAPYSKFQVGAALLTKDGKVYRGCNIENAAYSMCNHAEQTALFKAVSEGDTEFQMLAVAADTP
GPVSPCGACRQVISELCTKDVIVVLTNLQGQIKEMTVEELLPGAFSSEDLH

The query sequence (length=131) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1jtk:A 131 131 0.9847 0.9847 0.9847 2.50e-94 1jtk:B, 1uwz:A, 1uwz:B, 1ux0:A, 1ux0:B, 1ux1:A, 1ux1:B, 1ux1:C, 1ux1:D
2 2d30:A 124 124 0.6489 0.6855 0.6855 9.34e-61 2d30:B
3 3dmo:A 133 127 0.5267 0.5188 0.5433 3.18e-40 3dmo:B, 3dmo:C, 3dmo:D
4 2fr6:A 137 129 0.4809 0.4599 0.4884 1.17e-36 2fr5:A, 2fr5:C, 2fr5:B, 2fr5:D, 2fr6:C, 2fr6:B, 2fr6:D, 1zab:A, 1zab:C, 1zab:B, 1zab:D
5 1mq0:A 130 128 0.4885 0.4923 0.5000 1.68e-36 1mq0:B
6 7zob:E 136 132 0.4351 0.4191 0.4318 2.81e-32 7zob:A, 7zob:B, 7zob:C, 7zob:D, 7zob:F, 7zob:G, 7zob:H
7 1r5t:A 141 131 0.3969 0.3688 0.3969 4.61e-27 1r5t:B, 1r5t:C, 1r5t:D
8 3mpz:A 125 126 0.3282 0.3440 0.3413 8.60e-18 3mpz:B, 3mpz:C, 3mpz:D
9 4wig:A 126 130 0.3282 0.3413 0.3308 1.22e-17 3ijf:X, 4wif:A, 4wif:B, 4wig:B
10 4f3w:B 121 103 0.2824 0.3058 0.3592 1.39e-16 4f3w:A, 4f3w:C, 4f3w:D
11 6kw6:A 119 106 0.3053 0.3361 0.3774 8.68e-15 6kw6:B
12 3r2n:D 122 95 0.2443 0.2623 0.3368 1.46e-12 3r2n:A, 3r2n:B, 3r2n:C
13 4eg2:A 297 119 0.3206 0.1414 0.3529 2.48e-11 4eg2:B, 4eg2:C, 4eg2:D, 4eg2:E, 4eg2:F, 4eg2:G, 4eg2:H
14 4eg2:A 297 65 0.1756 0.0774 0.3538 1.96e-06 4eg2:B, 4eg2:C, 4eg2:D, 4eg2:E, 4eg2:F, 4eg2:G, 4eg2:H
15 6k63:A 294 111 0.2824 0.1259 0.3333 8.39e-10 6k63:B, 6k63:C, 6k63:D
16 6k63:A 294 44 0.1374 0.0612 0.4091 0.001 6k63:B, 6k63:C, 6k63:D
17 3oj6:A 134 111 0.2824 0.2761 0.3333 2.44e-08 3oj6:B, 3oj6:C, 3oj6:D
18 1af2:A 294 113 0.2748 0.1224 0.3186 3.26e-08 1aln:A, 1ctt:A, 1ctu:A
19 1af2:A 294 70 0.1908 0.0850 0.3571 3.02e-04 1aln:A, 1ctt:A, 1ctu:A
20 2z3i:A 129 105 0.2137 0.2171 0.2667 1.27e-07 1wn5:A, 1wn5:B, 1wn5:C, 1wn5:D, 1wn6:A, 1wn6:B, 2z3g:A, 2z3g:B, 2z3g:C, 2z3g:D, 2z3h:A, 2z3h:B, 2z3h:C, 2z3h:D, 2z3i:B, 2z3i:C, 2z3i:D, 2z3j:A, 2z3j:B, 2z3j:C, 2z3j:D
21 3iiv:B 262 21 0.0840 0.0420 0.5238 0.46 7ac8:A, 7ac8:C, 7ac8:E, 6ct3:A, 5d2t:A, 5d2w:A, 6dc1:A, 6dc1:B, 6dc1:H, 6dc1:K, 6dkv:A, 6dnj:A, 1gpw:C, 1gpw:E, 6rtz:A, 6ru0:A, 6ru0:C, 6ru0:E, 2wjz:A, 2wjz:C
22 8cib:D 196 27 0.0992 0.0663 0.4815 2.8 8cib:F
23 3tw1:A 222 44 0.0916 0.0541 0.2727 3.0
24 7qc8:A 250 21 0.0840 0.0440 0.5238 3.3 4ewn:D, 2wjz:E, 3zr4:E
25 6gh2:A 908 42 0.0916 0.0132 0.2857 3.5 6gh2:B, 6gh3:A, 6gh3:B
26 8c9v:A 187 19 0.0840 0.0588 0.5789 4.7
27 7zr1:D 780 65 0.1527 0.0256 0.3077 5.2 7zr1:C
28 7vg3:A 860 56 0.1374 0.0209 0.3214 9.8 7vg2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218