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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNRKWEAKLKQIEERASEEPPSIWRLFHRQAQAFNFVKSCKEDVHVFALECKVGDGQRIYLVTTYAEFWFYYKSRKNLLH
CYEVIPENAVCKLYFDLEFNKPANPGADGKKMVALLIEYVCKALQELYGVNCSAEDVLNLDSSTDEKFSRHLIFQLHDVA
FKDNIHVGNFLRKILQPALDLLPDLSFLVVKNNMGEKHLFVDLGVYTRNRNFRLYKSSKIGKRVALEVTEDNKFFPIQSK
DVSDEYQYFLSSLVSNVRFSDTLRILTCEP

The query sequence (length=270) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5l2x:A 271 271 1.0000 0.9963 0.9963 0.0 7jk1:A, 7jk1:B, 7jkl:A, 7jkl:B, 7jkp:A, 7jkp:B, 7jl8:A, 7jl8:B, 7jlg:A, 7jlg:B, 5l2x:B
2 7s9v:A 1296 100 0.1037 0.0216 0.2800 0.34
3 7adr:A 473 88 0.0963 0.0550 0.2955 1.1 7adr:D, 7ady:A, 7ady:D, 7aiz:A, 7aiz:D, 6fea:A, 6fea:D, 5n6y:A, 5n6y:D
4 5wtk:A 1215 101 0.1185 0.0263 0.3168 1.9 7dmq:A
5 6hzn:A 743 45 0.0593 0.0215 0.3556 2.1
6 2as9:A 207 32 0.0556 0.0725 0.4688 2.5 2as9:B
7 7w3u:A 343 161 0.1407 0.1108 0.2360 3.1 7w3r:A, 7w3u:B, 7w3u:C
8 6eo0:B 275 82 0.0704 0.0691 0.2317 4.5 6enx:A, 6eo0:A, 6eo0:C, 6eo0:D, 6fky:A, 6fky:B, 6fkz:A, 6fkz:B, 6flg:A, 6flg:B, 5ojo:A, 5ojo:B, 4utn:A, 4utn:B, 4utr:A, 4utr:B, 4utv:A, 4utv:B, 4utx:A, 4utx:B, 4utz:A, 4utz:B, 4uu7:A, 4uu7:B, 4uu8:A, 4uu8:B, 4uua:A, 4uua:B, 4uub:A, 4uub:B
9 8tj5:0 1246 23 0.0481 0.0104 0.5652 4.6 8tj5:Y
10 6okp:K 133 18 0.0370 0.0752 0.5556 5.1 7ugo:N, 7ugp:M, 7ugp:N
11 6ieq:H 231 17 0.0370 0.0433 0.5882 6.0 5cey:D, 8d50:H, 6mug:H, 6nnf:H, 5t3s:H, 5t3x:H, 8tgo:O, 8tgo:f, 7ucf:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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