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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNPFASLTLTTLTILTIPIMMSNSNIYKTNLYPNYVKTTVSYAFTLSLVPLLMFMHTGQEMIISNWHWMTLQTVELSLSF
KMDYFSVMFIPVALFVTWSIMEFSMWYMHSDPFINRFFKYLLLFLITMMILVTANNLFQLFIGWEGVGIMSFLLIGWWHG
RTDANTAALQAILYNRIGDIGFVLSMAWFLTHSNAWDLQQIFMLNNECPNMPLIGLLLAAAGKSAQFGLHPWLPSAMEGP
TPVSALLHSSTMVVAGVFLLIRFYPLMETNKLVQTMTLCLGAITTLFTALCAITQNDIKKIVAFSTSSQLGLMMVTIGIN
QPHLAFLHICMHAFFKAMLFMCSGSIIHSLNDEQDIRKMGGLYKAMPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVN
MSYTNAWALLMTLIATSLTAAYSTRIIFFAFLGKPRFPPLVLINENNPLLINSIKRLLIGSIFAGFIISNNIPPMTVPNT
TMPLYMKMTALIVTIMGFMLALELNNTTYYLKFKYPSQTYKFSNMLGYYPSIMHRLPTYHNLSMSQKSASSLLDLIWLET
ILPKTTSFIQMKMSIMVSNQKGLIKLYFLSFLITIMISMTLFNYHE

The query sequence (length=606) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7v2h:l 606 606 1.0000 1.0000 1.0000 0.0 7vc0:l, 7vy1:l, 7vys:l, 7w0h:l, 7w2l:l, 7w2r:l, 7w2y:l, 7w32:l, 7w4q:l
2 5lnk:L 599 598 0.8102 0.8197 0.8211 0.0
3 7a23:a 600 590 0.3251 0.3283 0.3339 1.21e-97
4 8bpx:L 665 610 0.3267 0.2977 0.3246 2.59e-97 8bef:L
5 7zme:5 670 410 0.2805 0.2537 0.4146 5.76e-95 7zmg:5
6 6rfq:5 654 414 0.2739 0.2538 0.4010 8.81e-90 7o6y:5, 6rfr:5
7 8qby:L 659 429 0.2871 0.2640 0.4056 6.11e-86 8qc1:L
8 6l7o:F 647 392 0.2673 0.2504 0.4133 4.93e-84 6l7p:F
9 8e9g:L 625 423 0.2574 0.2496 0.3688 1.56e-77 8e9h:L, 8e9i:L
10 3rko:L 612 455 0.2657 0.2631 0.3538 4.39e-76 3rko:B
11 8gym:n5 709 369 0.2013 0.1721 0.3306 5.45e-57 8gym:N5, 7tgh:5
12 4wz7:5 619 361 0.2162 0.2116 0.3629 5.09e-52 6h8k:5
13 6tjv:F 600 339 0.1634 0.1650 0.2920 4.50e-38
14 8qby:M 503 423 0.1749 0.2107 0.2506 2.73e-21 8qc1:M
15 8bpx:M 494 387 0.1650 0.2024 0.2584 1.22e-18 7a23:M, 7aqq:M, 7ar7:M, 7ar8:M, 7arb:M, 8bef:M
16 8e9i:M 518 286 0.1172 0.1371 0.2483 1.16e-14 8e9g:M, 8e9h:M
17 6rfq:4 486 333 0.1353 0.1687 0.2462 3.50e-13 6rfr:4, 6y79:4
18 3rko:M 504 301 0.1304 0.1567 0.2625 5.65e-13 3rko:C
19 6l7o:B 493 340 0.1502 0.1846 0.2676 2.14e-12 6l7p:B
20 7v2c:r 459 400 0.1601 0.2113 0.2425 2.86e-11 7v2d:r, 7v2e:r, 7v2f:r, 7v2h:r, 7v2k:r, 7v2r:r, 7v30:r, 7v31:r, 7v32:r, 7v33:r, 7v3m:r, 7vbl:r, 7vbp:r, 7vc0:r, 7vwl:r, 7vxs:r, 7vy1:r, 7vy9:r, 7vye:r, 7vyg:r, 7vyi:r, 7vys:r, 7vz8:r, 7vzv:r, 7vzw:r, 7w00:r, 7w0h:r, 7w0r:r, 7w0y:r, 7w1o:r, 7w1p:r, 7w1t:r, 7w1u:r, 7w1v:r, 7w1z:r, 7w20:r, 7w2k:r, 7w2l:r, 7w2r:r, 7w2u:r, 7w2y:r, 7w31:r, 7w32:r, 7w35:r, 7w4c:r, 7w4d:r, 7w4e:r, 7w4f:r, 7w4g:r, 7w4j:r, 7w4k:r, 7w4l:r, 7w4m:r, 7w4n:r, 7w4q:r
21 6l7o:D 504 380 0.1551 0.1865 0.2474 6.88e-11 6l7p:D
22 7zmb:4 494 177 0.0809 0.0992 0.2768 7.34e-09 7zme:4, 7zmg:4, 7zmh:4
23 5lnk:M 459 391 0.1485 0.1961 0.2302 1.55e-08 8q0a:M, 8q0f:M, 8q0m:M, 8q0o:M, 8q1y:M, 8q25:M, 8q45:M, 8q48:M, 8q49:M, 8q4a:M, 7qso:M, 7r4f:M, 7r4g:M, 6zkm:M, 6zkn:M, 6zku:M, 6zkv:M
24 5xtc:r 459 327 0.1122 0.1481 0.2080 4.30e-08 5xtd:r, 5xth:r, 5xti:r, 5xti:Br
25 8iaq:M 459 291 0.1056 0.1394 0.2199 7.54e-07 8ib6:M, 8ibb:M, 8ibf:M, 8ic4:M
26 8iaq:N 344 237 0.1155 0.2035 0.2954 1.34e-06 8ib6:N, 8ibb:N, 8ibf:N, 8ic4:N
27 7aqq:N 488 363 0.1386 0.1721 0.2314 1.40e-06 7a23:I, 7a24:I, 7ar7:N, 7ar8:N, 8bef:N, 8bpx:N
28 7o6y:2 469 337 0.1254 0.1620 0.2255 8.49e-06 7o71:2, 6rfq:2, 6rfr:2, 6y79:2, 7zkp:2
29 8qby:N 479 222 0.0858 0.1086 0.2342 5.08e-05
30 7qso:N 347 182 0.0644 0.1124 0.2143 1.49e-04 7r41:N, 7r42:N, 7r44:N, 7r45:N, 7r47:N, 7r48:N, 7r4c:N, 7r4d:N, 7r4f:N, 7r4g:N, 6zkm:N, 6zkn:N, 6zku:N, 6zkv:N
31 7zmb:2 558 386 0.1337 0.1452 0.2098 1.78e-04 7zme:2, 7zmg:2, 7zmh:2
32 5gup:i 347 177 0.0644 0.1124 0.2203 3.28e-04 7v2c:i, 7v2d:i, 7v2e:i, 7v2f:i, 7v2h:i, 7v2k:i, 7v2r:i, 7v30:i, 7v31:i, 7v32:i, 7v33:i, 7v3m:i, 7vbl:i, 7vbp:i, 7vc0:i, 7vwl:i, 7vxs:i, 7vy1:i, 7vy9:i, 7vye:i, 7vyg:i, 7vyi:i, 7vys:i, 7vz8:i, 7vzv:i, 7vzw:i, 7w00:i, 7w0h:i, 7w0r:i, 7w0y:i, 7w1o:i, 7w1p:i, 7w1t:i, 7w1u:i, 7w1v:i, 7w1z:i, 7w20:i, 7w2k:i, 7w2r:i, 7w2u:i, 7w2y:i, 7w31:i, 7w32:i, 7w35:i, 7w4c:i, 7w4d:i, 7w4e:i, 7w4f:i, 7w4g:i, 7w4j:i, 7w4k:i, 7w4l:i, 7w4m:i, 7w4n:i, 7w4q:i
33 7zkq:2 448 258 0.1040 0.1406 0.2442 4.66e-04
34 5xtc:i 347 182 0.0710 0.1239 0.2363 0.16 5xtd:i, 5xth:i, 5xti:i, 5xti:Bi
35 7xz5:R 292 77 0.0462 0.0959 0.3636 1.0 7wcm:R, 7wcn:R, 7xz6:R, 8zr5:C, 8zrk:R
36 7wge:A 698 119 0.0528 0.0458 0.2689 2.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218