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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNLVELGSKTAKDGFKNEKDIADRFENWKENSEAQDWLVTMGHNLDEIKSVKAVVLSGYKSDINVQVLVFYKDALDIHNI
QVKLVSNKRGFNQIDKHWLAHYQEMWKFDDNLLRILRHFTGELPPYHSNTKDKRRMFMTEFSQEEQNIVLNWLEKNRVLV
LTDILRGRGDFAAEWVLVAQKVSNNARWILRNINEVLQHYGSGDISLSPRGSINFGRVTIQRKGGDNGRETANMLQFKID
PTELFDI

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2fkc:A 247 247 1.0000 1.0000 1.0000 0.0 2fkc:B, 2fkh:B, 2fl3:A, 2flc:A
2 5esp:A 292 23 0.0405 0.0342 0.4348 1.7 5esp:B
3 8ovj:c 229 109 0.1012 0.1092 0.2294 2.2 8a3w:c, 8a98:c, 6az3:c, 3jcs:c, 8rxh:Lc, 8rxx:Lc, 5t2a:u
4 3bdn:A 234 66 0.0810 0.0855 0.3030 2.6 3bdn:B, 2hnf:A, 2ho0:A, 1lli:A, 1lli:B, 1lmb:3, 1lmb:4, 1rio:A, 1rio:B
5 7mca:C 584 71 0.0891 0.0377 0.3099 7.2 6rqc:C, 6wgi:C, 5zr1:C
6 7yb2:D 264 30 0.0445 0.0417 0.3667 7.5 8hfj:A, 8hfj:B, 8hfj:C, 8hfj:D, 8hfk:A, 8hfk:B, 8hfk:C, 8hfk:D, 7yb1:D, 7yb1:A, 7yb1:B, 7yb1:C, 7yb2:A, 7yb2:B, 7yb2:C
7 8hcj:D 433 128 0.1255 0.0716 0.2422 8.2 8hcj:E, 8hcj:H, 8hcj:A, 8hcj:B, 8hcj:G, 8hcj:C, 8hcj:F
8 6zpo:b 209 87 0.0931 0.1100 0.2644 8.4 2wss:T, 6z1u:b, 6zbb:b, 6zmr:b, 6zqm:b, 6zqn:b
9 5t5h:w 215 41 0.0486 0.0558 0.2927 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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