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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MNLQRFPRYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQ
TRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVSWEDALESVRAAGGKPYAIPAGCSDHPLGGL
GFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQITRIARQTAEKVGLER
DIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYAHLGGVPALNG
YSFIFRDG

The query sequence (length=328) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1rqx:C 338 338 1.0000 0.9704 0.9704 0.0 1rqx:A, 1rqx:B, 1rqx:D, 1tyz:A, 1tyz:B, 1tyz:C, 1tyz:D, 1tz2:A, 1tz2:B, 1tz2:C, 1tz2:D, 1tzj:A, 1tzj:B, 1tzj:C, 1tzj:D, 1tzk:A, 1tzk:B, 1tzk:C, 1tzk:D, 1tzm:A, 1tzm:B, 1tzm:C, 1tzm:D
2 1f2d:A 341 336 0.6067 0.5836 0.5923 1.86e-139 1f2d:B, 1f2d:C, 1f2d:D, 1j0c:A, 1j0c:B, 1j0c:C, 1j0c:D, 1j0d:A, 1j0d:B, 1j0d:C, 1j0d:D, 1j0e:A, 1j0e:B, 1j0e:C, 1j0e:D
3 4d8u:H 331 331 0.3780 0.3746 0.3746 4.95e-61 4d8u:A, 4d8u:B, 4d8u:C, 4d8u:D, 4d8u:E, 4d8u:F, 4d8u:G, 4d8w:A, 4d8w:C, 4d8w:D, 4d92:A, 4d92:B, 4d92:C, 4d92:D, 4d96:A, 4d96:B, 4d96:C, 4d96:D, 4d97:A, 4d97:B, 4d97:C, 4d97:D, 4d99:A, 4d99:B, 4d99:C, 4d99:D, 4d9b:A, 4d9b:B, 4d9b:C, 4d9b:D, 4d9c:A, 4d9c:B, 4d9c:C, 4d9c:D, 4d9e:A, 4d9e:B, 4d9e:C, 4d9e:D, 4d9f:A, 4d9f:B, 4d9f:C, 4d9f:D
4 1j0a:A 325 323 0.3140 0.3169 0.3189 2.51e-45 1j0a:B, 1j0a:C, 1j0b:A, 1j0b:B, 1j0b:C, 1j0b:D, 1j0b:E, 1j0b:F, 1j0b:G, 1j0b:H, 1j0b:I, 1j0b:J, 1j0b:K, 1j0b:L, 1j0b:M, 1j0b:N, 1j0b:O, 1j0b:P, 1j0b:Q, 1j0b:R, 1j0b:S, 1j0b:T, 1j0b:U, 1j0b:V, 1j0b:W, 1j0b:X
5 6nmx:A 350 319 0.2470 0.2314 0.2539 4.41e-07 6cgq:A, 6cgq:B, 6nmx:B, 6nmx:C, 6nmx:D
6 5ey5:B 383 308 0.2439 0.2089 0.2597 1.73e-04 5ey5:D
7 8vhh:A 389 317 0.2287 0.1928 0.2366 1.90e-04 8egy:A, 8egy:B, 8egz:A, 8egz:B, 8eh0:A, 8eh0:B, 8eh1:A, 8eh1:B, 8vhh:B
8 8s5h:A 507 289 0.2012 0.1302 0.2284 0.054 4coo:A, 4coo:B, 1jbq:A, 1jbq:B, 1jbq:C, 1jbq:D, 1jbq:E, 1jbq:F, 4l0d:A, 4l0d:B, 4l27:B, 4l27:D, 4l27:A, 4l27:C, 4l28:A, 4l28:B, 4l28:C, 4l28:D, 4l3v:B, 4l3v:A, 4l3v:C, 1m54:A, 1m54:B, 1m54:C, 1m54:D, 1m54:E, 1m54:F, 5mms:A, 5mms:F, 5mms:B, 5mms:C, 5mms:D, 5mms:E, 4pcu:A, 4pcu:B, 7qgt:A, 7qgt:B, 8s5h:B, 8s5h:C, 8s5h:D, 8s5h:E, 8s5h:F, 8s5h:G, 8s5h:H, 8s5i:A, 8s5i:B, 8s5i:C, 8s5i:D, 8s5i:E, 8s5i:F, 8s5j:A, 8s5j:B, 8s5j:C, 8s5j:D, 8s5j:E, 8s5j:F, 8s5j:G, 8s5j:H, 8s5j:I, 8s5j:J, 8s5k:A, 8s5k:B, 8s5k:C, 8s5k:D, 8s5k:E, 8s5k:F, 8s5k:G, 8s5k:H, 8s5l:A, 8s5l:B, 8s5l:C, 8s5l:D, 8s5m:A, 8s5m:B, 8s5m:C, 8s5m:D, 8s5m:E, 8s5m:F, 8s5m:G, 8s5m:H, 8s5m:I, 8s5m:J, 8stw:A, 8stw:B, 8stw:C, 8stw:D, 8stw:E, 8stw:F, 4uuu:A, 4uuu:B
9 6dnz:A 317 89 0.0823 0.0852 0.3034 0.16 6dnz:C
10 5ixj:D 394 221 0.1799 0.1497 0.2670 0.23 6am8:A, 6am8:B, 6am8:C, 6am8:D, 6am9:A, 6am9:B, 6am9:C, 6am9:D, 6amh:A, 6amh:B, 6amh:C, 6amh:D, 6ami:A, 6ami:B, 6ami:C, 6ami:D, 6cut:A, 6cut:B, 6cut:C, 6cut:D, 6cuz:A, 6cuz:D, 5dw0:A, 5dw0:B, 5dw0:C, 5dw0:D, 5dw3:A, 5dw3:B, 5dw3:C, 5dw3:D, 5ixj:A, 5ixj:B, 5ixj:C, 7rnp:A, 7rnp:B, 7rof:A, 7rof:D, 5t6m:A, 5t6m:B, 5t6m:C, 5t6m:D, 1v8z:A, 1v8z:B, 1v8z:C, 1v8z:D, 5vm5:A, 5vm5:B, 5vm5:C, 5vm5:D, 1wdw:B, 1wdw:D, 1wdw:F, 1wdw:H, 1wdw:J, 1wdw:L
11 8y1j:A 502 87 0.0884 0.0578 0.3333 0.29 8y1j:B
12 3aex:A 351 328 0.2470 0.2308 0.2470 0.29 3aex:B, 3aey:A, 3aey:B, 1uim:A, 1uim:B, 1uin:A, 1uin:B, 1v7c:A, 1v7c:B, 1v7c:C, 1v7c:D
13 4w5k:A 380 137 0.1067 0.0921 0.2555 0.30 4w5k:B
14 5ohx:A 488 98 0.0945 0.0635 0.3163 0.32 5ohx:B
15 2d1f:A 349 322 0.2439 0.2292 0.2484 0.35 2d1f:B
16 6c2h:A 345 53 0.0671 0.0638 0.4151 0.39 6c2q:A, 6c2z:A, 6c4p:A
17 1pjc:A 361 92 0.0823 0.0748 0.2935 0.42 1say:A
18 5tci:H 406 229 0.1646 0.1330 0.2358 1.0 6dwe:B, 6dwe:H, 6dwe:F, 6dwe:D, 6e9p:B, 6e9p:D, 6e9p:F, 6e9p:H, 5ocw:B, 5ocw:D, 5ocw:F, 5ocw:H, 5ocw:J, 5ocw:L, 5ocw:N, 5ocw:P, 5ocw:R, 5ocw:T, 5ocw:V, 5ocw:X, 5tcg:B, 5tcg:H, 5tcg:F, 5tcg:D, 5tci:B, 5tci:F, 5tci:D, 5tcj:B, 5tcj:H, 5tcj:F, 5tcj:D, 6u6c:B, 6u6c:D, 6u6c:F, 6u6c:H, 6uap:B, 6uap:D, 6uap:F, 6uap:H, 6ub9:B, 6ub9:D, 6ub9:F, 6ub9:H, 6usa:B, 6usa:D, 6usa:F, 6usa:H
19 9c4g:k 144 61 0.0518 0.1181 0.2787 1.2 8crx:k, 8cvm:k
20 6vju:B 317 116 0.1067 0.1104 0.3017 1.8
21 2zsj:A 350 334 0.2409 0.2257 0.2365 2.0 2zsj:B, 2zsj:C, 2zsj:D
22 8h6k:5B 2253 32 0.0427 0.0062 0.4375 2.5 8h6l:5B, 8i0u:A, 8i0v:A, 8q7n:A, 8qo9:A, 8qpe:A, 7qtt:a, 8qzs:A
23 6phv:A 721 95 0.0640 0.0291 0.2211 3.6 6phw:A, 6phx:A, 6phy:A, 6pi0:A
24 4zgf:A 141 46 0.0457 0.1064 0.3261 3.7
25 6q3r:A 334 84 0.0762 0.0749 0.2976 8.4 6q3r:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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