Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNLPTAQEVQGLMARYIELVDVGDIEAIVQMYADDATVENPFGQPPIHGREQIAAFYRQGLGGGKVRACLTGPVRASHNG
CGAMPFRVEMVWNGQPCALDVIDVMRFDEHGRIQTMQAYWSEVNLSV

The query sequence (length=127) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ry4:B 130 127 0.9921 0.9692 0.9921 5.17e-93 5ai1:A, 6c17:A, 6c1j:A, 6c1x:A, 3cpo:A, 1cqs:A, 1cqs:B, 1e3r:A, 1e3r:B, 1e3v:A, 1e3v:B, 3fzw:A, 3fzw:B, 5g2g:A, 5g2g:B, 1gs3:A, 2inx:A, 3ipt:A, 3ipt:B, 3ipt:C, 3ipt:D, 5kp1:A, 5kp1:B, 5kp1:C, 5kp1:D, 5kp3:A, 5kp3:B, 5kp4:B, 1ogx:A, 1ogx:B, 1oh0:A, 1oh0:B, 1oho:A, 3ows:A, 3ows:B, 3ows:C, 3ows:D, 3owu:A, 3owu:B, 3owu:C, 3owu:D, 3owy:A, 3owy:B, 3owy:C, 3owy:D, 3owy:E, 3owy:H, 2pzv:A, 2pzv:B, 2pzv:C, 2pzv:D, 7rxf:A, 7ry4:A, 3t8n:D, 3t8n:F, 6tzd:B, 6tzd:A, 6u4i:A, 6u4i:B, 6ubq:A, 6ubq:B, 6ucn:A, 6ucn:B, 6ucy:B, 6ucy:A, 6ufs:B, 3vgn:A, 3vgn:B, 1w6y:A
2 4cdl:A 126 126 0.8268 0.8333 0.8333 8.24e-75
3 1buq:A 125 125 0.3307 0.3360 0.3360 7.28e-17 1buq:B, 3m8c:B, 3m8c:D, 3m8c:C, 3myt:A, 3myt:C, 3nbr:A, 3nhx:A, 3nuv:A, 3nuv:B, 1ogz:A, 1ohp:A, 1ohp:B, 1ohp:C, 1ohp:D, 1ohs:A, 1ohs:B, 1ohs:C, 3ov4:A, 3ov4:B, 3ov4:C, 1qjg:A, 1qjg:B, 1qjg:C, 1qjg:D, 1qjg:E, 1qjg:F, 5ugi:A
4 6uad:A 121 121 0.3386 0.3554 0.3554 3.06e-16
5 6p44:B 117 124 0.3307 0.3590 0.3387 5.53e-16 6p44:A
6 6uae:C 125 121 0.2913 0.2960 0.3058 2.22e-12 6uae:A, 6uae:B, 6uae:D
7 7ytf:A 309 101 0.2362 0.0971 0.2970 3.95e-05
8 8a0h:A 324 100 0.2126 0.0833 0.2700 5.86e-04
9 6pq1:A 320 44 0.1024 0.0406 0.2955 0.002
10 5ui2:A 316 45 0.1024 0.0411 0.2889 0.004 5ui2:B
11 7zsg:1 314 44 0.0945 0.0382 0.2727 0.005 3mg1:A, 3mg1:B, 3mg2:A, 3mg2:B, 3mg3:A, 3mg3:B, 7sc9:BH, 7sc9:CQ, 7sc9:DI, 7sc9:EA, 7scb:BH, 7scc:AS, 7scc:BP, 6t6k:A, 6t6m:A, 6t6o:A, 8to2:B, 8tpj:B, 5tuw:A, 5tuw:B, 5tuw:C, 5tuw:D, 5tuw:E, 5tuw:F, 5tux:A, 5tv0:A, 4xb4:A, 4xb4:B, 4xb5:A, 7zsf:A, 7zsh:1, 7zsi:1, 7zsj:1, 7zxv:A
12 7qd1:A 311 44 0.0945 0.0386 0.2727 0.017 7qcz:A, 7qd0:A, 7qd1:C, 7qd2:A, 7qd2:C
13 8pyh:B 319 104 0.2126 0.0846 0.2596 0.030 8pyh:A
14 8pzk:A 300 101 0.1811 0.0767 0.2277 0.22
15 2z77:D 130 111 0.1890 0.1846 0.2162 0.29
16 4d11:C 436 58 0.1339 0.0390 0.2931 3.0
17 4rzm:B 283 151 0.2362 0.1060 0.1987 3.1 3rga:A, 4rzm:A
18 5if6:A 134 50 0.1102 0.1045 0.2800 4.2 2a15:A, 5ier:A, 5ier:B, 5ier:C, 5ier:D, 5if6:B, 5if6:C, 5if6:D, 5if6:E, 5if6:F, 2z77:A, 2z77:B, 2z77:C
19 1w7j:A 752 23 0.0787 0.0133 0.4348 7.9 7pm5:A, 7pm6:A, 7pm6:D, 7pm7:A, 7pm8:A, 7pm9:A, 7pma:A, 7pmb:A, 7pmc:A, 7pmd:A, 7pme:A, 7pme:D, 7pmf:A, 7pmg:A, 7pmh:A, 7pmi:A, 7pmj:A, 7pml:A, 1w7i:A
20 3lop:A 353 71 0.1496 0.0538 0.2676 8.4
21 6sga:F2 915 53 0.1024 0.0142 0.2453 8.8 7pua:F2, 6sgb:F2
22 4d0t:A 496 58 0.1339 0.0343 0.2931 9.7 5ajn:A, 5ajo:A, 5ajp:A, 4d0t:C, 4d0t:F, 4d0t:B, 4d0t:D, 4d0t:E, 4d0z:B, 4d0z:E, 4d0z:A, 4d0z:C, 4d0z:D, 4d0z:F, 4d11:D, 4d11:E, 4d11:B, 4d11:A, 4d11:F, 6e7i:A, 6egs:A, 6egs:B, 2ffu:A, 2ffv:A, 2ffv:B, 5fv9:A, 5fv9:B, 5fv9:C, 5fv9:D, 5fv9:E, 5fv9:F, 5ndf:A, 5ndf:B, 5ndf:C, 5ndf:D, 5ndf:E, 5ndf:F, 6nqt:A, 6nqt:B, 6nqt:C, 6nqt:D, 6nqt:E, 6nqt:F

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218