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BioLiP
>protein
MNLEAKKKVLRSFTYGLYVLTAKDGDEVAAGTVNWVTQASFQPPLVAVGLKRDSHLHALVERTGKLALMTLAHDQKAIAQ
DFFKPTVREGDRLNGHPFEPSPTFGLPLLTELPYWLEAEVRHLYPGGDHSLVVAEVVEAGVRREEKPLVMWDTGWFYGG

The query sequence (length=159) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1yoa:A 159 159 1.0000 1.0000 1.0000 2.00e-116
2 4l82:B 167 149 0.2138 0.2036 0.2282 1.27e-14 4l82:A
3 3rh7:A 292 133 0.2201 0.1199 0.2632 1.00e-10 3rh7:C, 3rh7:D, 3rh7:F
4 2ed4:A 149 152 0.2767 0.2953 0.2895 1.02e-10 2ed4:B
5 4f07:F 155 156 0.2893 0.2968 0.2949 3.19e-10 4f07:A, 4f07:B, 4f07:C, 4f07:G, 4f07:D, 4f07:E, 4f07:H, 4f07:I, 4f07:J, 4f07:L, 4f07:K
6 1i0r:A 161 155 0.2642 0.2609 0.2710 2.12e-09 1i0s:A
7 1rz0:A 153 153 0.2201 0.2288 0.2288 1.61e-08 1rz0:B, 1rz0:C, 1rz0:D, 1rz0:E, 1rz0:F, 1rz0:G, 1rz0:H, 1rz1:A, 1rz1:B, 1rz1:C, 1rz1:D, 1rz1:E, 1rz1:F, 1rz1:G, 1rz1:H
8 5cho:A 165 136 0.2264 0.2182 0.2647 1.78e-08 5cho:C, 5cho:B, 5cho:D, 5cho:E, 5cho:F, 5cho:G, 5cho:H
9 4r82:A 166 108 0.2075 0.1988 0.3056 2.09e-08 4r82:B
10 8ct0:H 178 148 0.2767 0.2472 0.2973 2.16e-08 8ct0:A, 8ct0:B, 8ct0:C, 8ct0:G, 8ct0:D, 8ct0:E, 8ct0:F
11 3pft:B 157 139 0.2327 0.2357 0.2662 7.02e-07 3pft:A
12 2d38:A 156 154 0.2390 0.2436 0.2468 1.10e-06 2d36:A, 2d37:A
13 2r6v:A 182 123 0.1950 0.1703 0.2520 3.59e-05 3zoc:A, 3zod:A, 3zog:A
14 3k87:A 164 119 0.1887 0.1829 0.2521 4.25e-05 3k87:B, 3k88:A, 3k88:B
15 5zyr:A 306 136 0.2013 0.1046 0.2353 1.12e-04 5zc2:B, 5zc2:A, 5zyr:B
16 4xj2:A 162 135 0.2075 0.2037 0.2444 2.28e-04
17 1eje:A 192 130 0.2075 0.1719 0.2538 0.001
18 1usc:A 178 107 0.1761 0.1573 0.2617 0.26 1usc:B, 1usf:A, 1usf:B, 3zoe:A, 3zoe:B, 3zof:A, 3zof:B, 3zoh:A, 3zoh:B, 3zoh:C, 3zoh:D
19 6rjm:B 456 104 0.1824 0.0636 0.2788 3.8 6rjm:A, 6rjo:A, 6rjo:B, 6rk2:A, 6rk2:B
20 6g4g:B 759 23 0.0692 0.0145 0.4783 6.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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