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BioLiP
>protein
MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKKGDALQLVGFGTFKVNHRAERAANVPAFVSGKALKDAVK

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6oaj:B 79 79 0.9605 0.9241 0.9241 1.94e-45 6o6k:A, 6o8q:A, 6o8q:I, 6oaj:C, 4yey:C, 4yf0:A, 4yfh:A
2 6o8q:B 91 90 0.9737 0.8132 0.8222 2.84e-44 6o8q:G, 6o8q:H, 6o8q:F, 4yf0:B, 4yfh:B
3 4yew:C 71 76 0.9079 0.9718 0.9079 1.86e-42 6o6k:B, 6oaj:D, 4yex:C, 4yft:C
4 4qju:A 90 90 0.5526 0.4667 0.4667 6.54e-21 4qju:B
5 1p71:A 94 89 0.4605 0.3723 0.3933 5.36e-15 1p51:A, 1p51:B, 1p51:D, 1p51:C, 1p71:B, 1p78:A, 1p78:B
6 8flj:F 94 90 0.3421 0.2766 0.2889 6.56e-10 8flj:H
7 4dky:B 101 89 0.3947 0.2970 0.3371 1.64e-09
8 1ihf:B 94 88 0.3026 0.2447 0.2614 1.15e-06 2ht0:B, 5j0n:J, 5j0n:L, 1ouz:B, 1owf:B, 1owg:B, 5wfe:L
9 2iie:A 204 63 0.2368 0.0882 0.2857 3.44e-04 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
10 2iie:A 204 59 0.2237 0.0833 0.2881 0.013 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
11 8flj:G 98 63 0.2105 0.1633 0.2540 0.002 8flj:E
12 2np2:A 102 93 0.2763 0.2059 0.2258 2.6 2np2:B
13 8i23:C 1164 26 0.1316 0.0086 0.3846 6.1 8i24:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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