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BioLiP
>protein
MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKKGDALQLVGFGTFKVNHRAEANVPAFVSGKALKDAVK

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6oaj:B 79 79 0.9595 0.8987 0.8987 1.32e-43 6o6k:A, 6o8q:A, 6o8q:I, 6oaj:C, 4yey:C, 4yf0:A, 4yfh:A
2 4yew:C 71 74 0.9324 0.9718 0.9324 1.10e-42 6o6k:B, 6oaj:D, 4yex:C, 4yft:C
3 6o8q:B 91 90 0.9730 0.7912 0.8000 2.04e-42 6o8q:G, 6o8q:H, 6o8q:F, 4yf0:B, 4yfh:B
4 4qju:A 90 90 0.5405 0.4444 0.4444 3.65e-19 4qju:B
5 1p71:A 94 89 0.4730 0.3723 0.3933 6.87e-14 1p51:A, 1p51:B, 1p51:D, 1p51:C, 1p71:B, 1p78:A, 1p78:B
6 4dky:B 101 89 0.4054 0.2970 0.3371 2.43e-09
7 8flj:F 94 90 0.3378 0.2660 0.2778 4.07e-08 8flj:H
8 1ihf:B 94 88 0.2973 0.2340 0.2500 2.78e-05 2ht0:B, 5j0n:J, 5j0n:L, 1ouz:B, 1owf:B, 1owg:B, 5wfe:L
9 2iie:A 204 62 0.2568 0.0931 0.3065 0.009 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
10 2iie:A 204 59 0.2162 0.0784 0.2712 0.23 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
11 8flj:G 98 50 0.1892 0.1429 0.2800 0.074 8flj:E
12 5uwc:G 253 35 0.1757 0.0514 0.3714 1.8
13 2np2:A 102 93 0.2703 0.1961 0.2151 5.0 2np2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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