Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVAL
EYLQKTLSISVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTI
TSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASYTEHPDHRFFATG
DTTHITNIIKEWLNLSVNVERISVN

The query sequence (length=265) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2jfq:A 265 265 1.0000 1.0000 1.0000 0.0 2jfq:B
2 1zuw:C 262 256 0.4981 0.5038 0.5156 1.73e-87 1zuw:A, 1zuw:B
3 3hfr:A 266 265 0.5094 0.5075 0.5094 2.08e-87 3hfr:B
4 2gzm:A 266 263 0.5057 0.5038 0.5095 7.89e-84 2gzm:B, 2gzm:C, 2gzm:D
5 2vvt:A 269 251 0.4792 0.4721 0.5060 1.38e-81 2jfo:A, 2jfo:B, 2jfp:A, 2jfp:B, 2vvt:B
6 2dwu:B 266 260 0.4453 0.4436 0.4538 8.59e-68 2dwu:A, 2dwu:C
7 2ohv:A 258 262 0.4075 0.4186 0.4122 6.28e-66
8 5hj7:B 260 252 0.3736 0.3808 0.3929 1.74e-51 5hj7:A
9 5ijw:B 276 266 0.3925 0.3768 0.3910 7.00e-51 5ijw:A
10 1b74:A 252 203 0.3321 0.3492 0.4335 2.32e-48
11 3out:B 264 240 0.3208 0.3220 0.3542 1.58e-44 3out:A, 3out:C
12 6dli:A 256 267 0.3660 0.3789 0.3633 1.55e-43 6dli:B, 6dli:C, 6dli:D, 5w16:A, 5w16:B, 5w16:C, 5w16:D
13 3uhf:A 255 261 0.3509 0.3647 0.3563 6.99e-43 3uhf:B, 3uho:A, 3uho:B
14 7uj5:A 256 262 0.3321 0.3438 0.3359 9.14e-39 4b1f:A, 4b1f:B, 8eb3:A, 8eb3:B, 2jfx:A, 2jfx:B, 2jfy:A, 2jfy:B, 2jfz:A, 2jfz:B, 8tba:A, 8tba:B, 7uj5:B, 7uj5:C, 7uj5:D, 5w1q:A, 5w1q:B, 2w4i:A, 2w4i:B, 2w4i:E, 2w4i:F
15 2jfn:A 266 232 0.2792 0.2782 0.3190 1.15e-21
16 1yqd:A 359 82 0.0755 0.0557 0.2439 1.6 1yqd:B, 1yqx:A, 1yqx:B
17 8dga:A 1629 137 0.1396 0.0227 0.2701 2.4
18 2dy3:D 344 46 0.0491 0.0378 0.2826 3.6 2dy3:A, 2dy3:B, 2dy3:C
19 3bgu:A 106 75 0.0755 0.1887 0.2667 3.8
20 1wdl:A 715 108 0.0906 0.0336 0.2222 5.1 2d3t:A, 2d3t:B, 1wdk:A, 1wdk:B, 1wdl:B, 1wdm:A, 1wdm:B
21 8k3h:A 480 50 0.0604 0.0333 0.3200 5.2 8k3h:B
22 6nej:B 346 60 0.0642 0.0491 0.2833 5.6 6neg:A, 6neg:B, 6neh:A, 6neh:B, 6nej:A
23 5vkt:A 353 47 0.0566 0.0425 0.3191 5.9 5vkt:B
24 4pgh:D 358 64 0.0604 0.0447 0.2500 6.5 4pgh:A, 4pgh:B, 4pgh:C
25 6lod:C 456 48 0.0604 0.0351 0.3333 8.2 6loe:C

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218