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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MNIPNQITVFRVVLIPVFILFALVDFGFGNVSFLGGYEIRIELLISGFIFILASLSDFVDGYLARKWNLVTNMGKFLDPL
ADKLLVASALIVLVQLGLTNSVVAIIIIAREFAVTGLRLLQIEQGFVSAAGQLGKIKTAVTMVAITWLLLGDPLATLIGL
SLGQILLYIGVIFTILSGIEYFYKG

The query sequence (length=185) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7drj:A 190 185 1.0000 0.9737 1.0000 4.52e-127 7drj:B, 7drk:A, 7drk:B
2 7pow:B 204 26 0.0649 0.0588 0.4615 0.55 7b1k:A, 7b1k:B, 7b1l:A, 7b1l:B, 7b1n:A, 7b1n:B, 7pow:A
3 7zpq:CA 1742 55 0.0919 0.0098 0.3091 2.0 7zrs:CA, 7zuw:CA
4 3c0z:C 359 51 0.0865 0.0446 0.3137 2.7 3c0y:C, 3c10:C, 3znr:C, 3zns:C
5 3c0y:A 386 51 0.0865 0.0415 0.3137 3.0 3c0y:B, 3c0z:A, 3c0z:B, 3c10:A, 3c10:B, 3znr:A, 3znr:B, 3zns:A, 3zns:B
6 4o6m:B 341 81 0.1459 0.0792 0.3333 4.4 4o6m:A, 4o6n:A, 4o6n:B, 4q7c:A, 4q7c:B
7 8gyw:B 380 52 0.1027 0.0500 0.3654 4.7 8gyw:A, 8gyx:B, 8gyx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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