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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNIHEWQSKQLIQKYGGRAQSGEVAFSPERSRDIAKKLWNQFPGCEFVVKAQVLAGGRGKGHWEHGMQGGVKLAKTPEEV
YEIANEMIGHKLITKQTGAKGINCNKVMVCGAVDILKEFYLSILLDRAMGCPVIIATSQGGMGIEEVAQKCPECLFKVPI
SVKNGPTNEQLVKLAKDLGLEGDLVQDCVDNVKALYQVFDKCDSTMVEINPLGVIETPTDEKVICCLDAKIAFDKDAAF

The query sequence (length=239) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6no5:A 239 239 1.0000 1.0000 1.0000 2.11e-179 6no0:A, 6no0:B, 6no1:A, 6no2:A, 6no2:B, 6no3:A, 6no3:B, 6no4:A, 6no5:B, 6no5:C, 6no5:D
2 2fp4:B 393 239 0.4561 0.2774 0.4561 1.11e-62 2fpg:B, 7jfp:B, 7jkr:B, 7jmk:B, 7msr:B, 6wcv:B
3 3ufx:B 378 239 0.3891 0.2460 0.3891 2.45e-44 3ufx:E, 3ufx:G, 3ufx:I
4 1jkj:B 388 239 0.3766 0.2320 0.3766 3.77e-42 1cqi:B, 1cqi:E, 1cqj:E, 1cqj:B, 1jkj:E, 1jll:E, 1jll:B, 2nu6:E, 2nu6:B, 2nu7:E, 2nu7:B, 2nu8:E, 2nu8:B, 2nu9:E, 2nu9:B, 2nu9:I, 2nu9:G, 2nua:E, 2nua:B, 1scu:E, 1scu:B, 2scu:E, 2scu:B
5 6hxq:B 410 242 0.2929 0.1707 0.2893 6.42e-17
6 6hxj:A 336 124 0.1674 0.1190 0.3226 1.45e-09 6hxj:C, 6hxj:E, 6hxj:G
7 7pji:A 445 89 0.0962 0.0517 0.2584 0.27 4dqw:A, 4dqw:B, 6gk9:A, 6gk9:D, 7pji:B
8 2ej0:B 305 52 0.0669 0.0525 0.3077 0.34 2eiy:A, 2eiy:B, 2eiy:C, 2ej0:A, 2ej0:C, 2ej0:D, 2ej0:E, 2ej0:F, 2ej2:A, 2ej2:B, 2ej2:C, 2ej2:D, 2ej2:E, 2ej2:F, 2ej3:A, 2ej3:B, 2ej3:C, 1wrv:A, 1wrv:B, 1wrv:C
9 3mzo:B 211 71 0.0837 0.0948 0.2817 2.1 3mzo:A, 3mzo:C
10 6hxi:C 410 38 0.0628 0.0366 0.3947 2.5 6hxi:A, 6znw:A
11 4jin:A 254 50 0.0711 0.0669 0.3400 2.5 3re4:A, 3re4:B, 1zp9:A, 1zp9:B, 1zp9:C, 1zp9:D, 1ztf:A, 1zth:A, 1zth:B, 1zth:C, 1zth:D
12 1i1l:A 304 68 0.0921 0.0724 0.3235 2.6 1a3g:A, 1a3g:B, 1a3g:C, 1i1k:A, 1i1k:B, 1i1k:C, 1i1l:B, 1i1l:C, 1i1m:A, 1i1m:B, 1i1m:C, 1iyd:A, 1iyd:B, 1iyd:C, 1iye:A, 1iye:B, 1iye:C
13 4xcq:A 303 45 0.0460 0.0363 0.2444 2.6
14 8tpu:S8 317 36 0.0544 0.0410 0.3611 3.0
15 6jul:F 347 41 0.0502 0.0346 0.2927 4.7 6jul:A, 6jum:F, 6jum:A, 6jun:F, 6jun:A, 6juo:A, 6juo:F, 6jur:A, 6jur:F, 6jus:A, 6jus:F
16 3a1s:A 255 29 0.0460 0.0431 0.3793 5.2 3a1s:B, 3a1t:A, 3a1u:A, 3a1u:B
17 1nvb:B 391 92 0.0837 0.0512 0.2174 5.7 1dqs:A, 1dqs:B, 1nr5:A, 1nr5:B, 1nrx:A, 1nrx:B, 1nua:A, 1nua:B, 1nva:A, 1nva:B, 1nvb:A, 1nvd:A, 1nvd:B, 1nve:A, 1nve:B, 1nve:C, 1nve:D, 1nvf:A, 1nvf:B, 1nvf:C, 1sg6:A, 1sg6:B
18 1n8p:A 393 98 0.1004 0.0611 0.2449 7.1 1n8p:B, 1n8p:C, 1n8p:D
19 2wo4:A 159 79 0.0921 0.1384 0.2785 7.8 2wnx:A, 2wob:A, 2wob:C, 2wob:E
20 2wib:A 261 88 0.1046 0.0958 0.2841 9.0 2wib:B, 2wic:A
21 2czc:A 334 36 0.0418 0.0299 0.2778 9.6 2czc:B, 2czc:C, 2czc:D
22 3i8x:B 261 86 0.1088 0.0996 0.3023 9.7 3hyt:A, 3hyt:B, 3hyt:C, 3i8x:A, 3i8x:C, 4r98:A, 4r98:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218