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BioLiP
>protein
MNIEQRKKYLDITLNDVTVTCEKDMILLRKGSFTASFRIAVENESIRSMAIDLNAFEVELQPIIQYAEDTQNVNVAMMAV
VQFLRIKELHEQMISKIVEASKFIRASNNTITLNDLEVSFHCYWNLPSPYPETLILTNKVQKILDFLIYQYGIQLGVIKY
GSTI

The query sequence (length=164) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5mu3:E 164 164 1.0000 1.0000 1.0000 2.71e-121 5mu3:B
2 7pay:A 329 122 0.1890 0.0942 0.2541 0.90 7pax:A, 7pb0:A, 7pb1:A, 6w2l:A, 6z1n:A
3 5i6c:A 480 65 0.1098 0.0375 0.2769 0.90 5i6c:B
4 7pkq:w 155 46 0.0793 0.0839 0.2826 1.2
5 4xz6:A 291 38 0.0915 0.0515 0.3947 2.6 4xz6:B
6 5hxq:C 227 94 0.1524 0.1101 0.2660 3.6 5hxp:A, 5hxp:C, 5hxq:A, 5hxt:A, 5hxt:B
7 8kgb:C 245 94 0.1524 0.1020 0.2660 4.3 8kgb:A, 8kgb:B, 8kgb:D, 8x35:A, 8x35:B, 8x36:A, 8x36:B, 8x37:A, 8x37:B
8 4u82:A 236 22 0.0732 0.0508 0.5455 5.1 4h8e:A, 3wyi:A
9 4jos:B 230 33 0.0854 0.0609 0.4242 6.0 4jos:A
10 8s38:B 414 38 0.0732 0.0290 0.3158 7.4 8s38:A, 8s38:C, 8s39:A, 8s39:B, 8s39:C, 8s3a:A, 8s3a:B, 8s3a:C, 8s3a:D, 8s3a:E, 8s3a:F, 8s3b:A, 8s3b:B, 8s3b:C, 8s3b:D, 8s3b:E, 8s3b:F, 8s3b:G, 8s3b:H, 8s3b:I, 8s3b:J, 8s3b:K, 8s3b:L, 8s3c:B, 8s3d:A, 8s3d:B, 8s3d:C, 8s3d:D, 8s3d:E, 8s3d:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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