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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNIEKTRFCINRKIAPGLSIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAVYPFNQLTE
EVVKKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQGLVEPLGFRVSSLRSAVWAQQLIREA
GSPFKVLLDTFHHHLYEEAEKEFASRIDISAIGLVHLSGVEDTRPTEALADEQRIMLSEKDVMQNYQQVQRLENMGYRGI
YAFEPFSSQLASWSEAEIEEQINRSVSL

The query sequence (length=268) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2q02:A 272 268 1.0000 0.9853 1.0000 0.0 4hgx:A, 4hgx:B, 2q02:B, 2q02:C, 2q02:D
2 6he5:D 242 78 0.0896 0.0992 0.3077 0.17 6he5:E, 6he5:A, 6he5:B, 6he5:G, 6he5:F, 6he5:C
3 2v0n:A 459 57 0.0858 0.0501 0.4035 0.42 2v0n:B, 1w25:A, 1w25:B, 2wb4:A, 2wb4:B
4 3zqj:D 921 169 0.1381 0.0402 0.2189 0.56 3zqj:B, 3zqj:E
5 3vyl:A 297 111 0.1157 0.1044 0.2793 0.91 3vyl:B, 3vyl:C, 3vyl:D, 3vyl:E, 3vyl:F, 3vyl:G, 3vyl:H
6 3n4k:A 163 42 0.0522 0.0859 0.3333 1.4
7 2hk1:A 289 120 0.1194 0.1107 0.2667 1.7 2hk1:B, 2hk1:C, 2hk1:D
8 5agd:B 344 65 0.0784 0.0610 0.3231 2.4 5agd:A, 4boj:A, 4boj:B, 4boj:C, 4d4b:A, 4d4b:B, 4d4c:A, 4d4c:B, 4d4d:A, 4d4d:B, 5m77:A, 5m77:B, 5n0f:A, 5n0f:B, 7nl5:A, 6zbm:A, 6zbw:A, 6zbw:B, 6zbx:A, 6zbx:B
9 1gud:A 288 50 0.0672 0.0625 0.3600 4.5 1rpj:A, 8wl7:A, 8wl9:A, 8wlb:A
10 5z48:B 213 81 0.0933 0.1174 0.3086 5.3 5z48:A
11 8hkx:S10P 100 25 0.0410 0.1100 0.4400 5.6 8hky:S10P, 8hkz:S10P, 8hl1:S10P, 8hl2:S10P, 8hl3:S10P, 8hl4:S10P, 8hl5:S10P, 8wkp:S10P, 8wq2:S10P, 8wq4:S10P
12 8axy:A 296 66 0.0746 0.0676 0.3030 5.7 8edd:A, 8pkb:A
13 6elz:v 130 51 0.0448 0.0923 0.2353 8.9 6em1:v, 6em3:v, 6em4:v, 6em5:v, 7nac:v, 7ohp:v, 7ohr:v, 7ohs:v, 7ohv:v, 7ohw:v, 7ohx:v, 7r7a:v, 8v87:v
14 1jpa:A 273 35 0.0485 0.0476 0.3714 9.1 2hen:A, 2hen:B, 2hen:C, 2hen:D, 1jpa:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218