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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MNGYDPVLLSRILTELTLTVHIIYATIGVGVPLMIAIAQWVGIRKNDMHYILLARRWTRGFVITVAVGVVTGTAIGLQLS
LLWPNFMQLAGQVISLPLFMETFAFFFEAIFLGIYLYTWDRFENQKKHLLLLIPVAIGSSASAMFITMVNAFMNTPQGFE
LKNGELVNIDPIVAMFNPAMPTKVAHVLATSYMTSAFVLASIAAWHLWKGNRHIYHRKALHLTMKTAFIFSVASALVGDL
SGKFLAEYQPEKLAAAEWHFETSSHAPLILFGTLEEDNEVKYALEIPYALSILAHNHPAAVVTGLNDIPEDERPPLYIHY
LFDVMVTIGVFLMVVAAVYWLGSIFRWKWTAKNWFFGLLVAGGPLAMIAIEAGWYLAEVGRQPWILRGYMKTAEGATTSA
HVDTMLVLFCLLYIVLVIASATVLIRMFRRNP

The query sequence (length=432) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5doq:A 432 432 1.0000 1.0000 1.0000 0.0 5ir6:A
2 6rx4:A 474 466 0.2986 0.2722 0.2768 2.24e-48
3 6rko:A 444 447 0.2870 0.2793 0.2774 3.90e-46
4 7ose:A 503 503 0.3079 0.2644 0.2644 2.78e-41 7ose:D
5 7nkz:A 455 460 0.2894 0.2747 0.2717 3.77e-40
6 7oy2:C 454 458 0.2755 0.2621 0.2598 2.07e-38
7 7d5i:A 443 458 0.2940 0.2867 0.2773 2.49e-33
8 8b4o:A 442 452 0.2731 0.2670 0.2611 8.04e-29
9 8swu:A 269 124 0.0625 0.1004 0.2177 4.6 8swu:B, 8swu:C
10 2q5l:A 538 52 0.0486 0.0390 0.4038 5.3 2nxw:A, 2nxw:B, 2q5j:A, 2q5j:B, 2q5l:B, 2q5o:A, 2q5o:B, 2q5q:A, 2q5q:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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