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BioLiP
>protein
MNEPLVFMFSGQGSQYYHMGKELFKENTVFRQSMLEMDAIAARRIGTSIVEEIYHPGKRVSDPFDSILFSHPAIFMIEYS
LYKVLEDRGIYPDYVLGSSLGEFAAAAVSGVSDAEDMLDCILEQAIIIQNSCDKGKMLAILDKPQLLNDHPQLFGNSELI
SINYDSHFVISGEEDHIRKIMEDLKEKQILCQLLPVSYAFHSSLIDPAESAYAEFLRSKSFQKPSIPIVSSLTGSCLHVM
DENFFWNAVRKPMMFREAIRYLESQHTCKFIDLGPSGTLAAFVKQLIPGDSADRCCSIITPFHQELKNLNTVEYFRT

The query sequence (length=317) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8aw0:A 320 317 1.0000 0.9906 1.0000 0.0 8avz:A, 8avz:C, 8avz:B, 8avz:D, 8aw0:F, 8aw0:B, 8aw0:D, 8aw0:C, 8aw0:H, 8aw0:E
2 4mz0:A 896 289 0.2587 0.0915 0.2837 5.90e-38
3 5ydl:A 408 294 0.2334 0.1814 0.2517 1.06e-29 5ydm:A
4 7vef:A 828 292 0.2555 0.0978 0.2774 1.24e-26 8in9:A
5 4mz0:B 823 285 0.2366 0.0911 0.2632 4.10e-24
6 6l3m:B 420 285 0.2303 0.1738 0.2561 1.97e-23 6l3m:A, 6l3m:C, 6l3m:D, 6l3n:A, 6l3n:B, 6l3n:C, 6l3n:D
7 7s6c:B 891 311 0.2366 0.0842 0.2412 1.57e-22
8 5zk4:A 287 287 0.2429 0.2683 0.2683 1.52e-20 6apg:A, 6apg:B, 3sbm:A, 5zk4:B
9 7ags:A 427 237 0.1987 0.1475 0.2658 3.28e-20 7agu:A
10 2qo3:B 873 284 0.2240 0.0813 0.2500 2.15e-18 2qo3:A
11 7vrs:A 444 269 0.2271 0.1622 0.2677 2.20e-18 7vrs:B
12 3tqe:A 316 302 0.2303 0.2310 0.2417 3.61e-18
13 3hjv:A 307 291 0.2145 0.2215 0.2337 3.88e-17
14 7m7f:A 1390 296 0.2303 0.0525 0.2466 3.70e-16 2fr0:A, 2fr1:A, 7m7i:A
15 8cg6:A 1208 299 0.2397 0.0629 0.2542 4.31e-15
16 8cg5:A 1282 299 0.2397 0.0593 0.2542 4.44e-15 6fij:B
17 4amp:A 372 227 0.1893 0.1613 0.2643 4.82e-15
18 6u0j:A 309 291 0.2019 0.2071 0.2199 1.17e-14 2g2z:A
19 3im9:A 313 297 0.2208 0.2236 0.2357 6.82e-14
20 5my0:A 852 329 0.2461 0.0915 0.2371 6.30e-13 5my0:C, 5my0:D, 5my2:D, 6rop:A, 6rop:C, 6rop:D
21 3tzw:A 467 291 0.2177 0.1478 0.2371 1.73e-12 3tzx:B, 3tzx:A, 3tzy:B, 3tzy:A, 3tzz:B, 3tzz:A
22 6rop:B 831 322 0.2461 0.0939 0.2422 3.25e-12
23 8csp:8 326 248 0.2050 0.1994 0.2621 7.62e-12 2c2n:A, 8csq:8, 8csr:8, 8css:8
24 2vz9:B 2086 328 0.2366 0.0360 0.2287 2.89e-11 2vz9:A
25 8cuy:A 1016 304 0.2208 0.0689 0.2303 1.23e-09
26 2jfk:D 410 297 0.2208 0.1707 0.2357 6.81e-09
27 7tui:B 2033 186 0.1104 0.0172 0.1882 8.87e-04 6u5v:B, 6u5w:B
28 8ps2:G 2036 185 0.1136 0.0177 0.1946 0.005 3hmj:G, 3hmj:H, 3hmj:I, 8prv:G, 8prw:G, 8prw:J, 8prw:I, 8prw:H, 8prw:K, 8prw:L, 8ps1:G, 8ps9:G, 8psa:G, 8psf:G, 8psg:G, 8psj:G, 8psk:G, 8psl:G, 8psm:G, 8psp:G, 6ql5:I, 6ql5:G, 6ql5:H, 6ql5:L, 6ql5:J, 6ql5:K, 6ql6:G, 6ql6:H, 6ql6:I, 6ql6:J, 6ql6:K, 6ql6:L, 6ql9:G, 6ql9:H, 6ql9:I, 6ql9:J, 6ql9:K, 6ql9:L, 6ta1:G, 6ta1:C, 6ta1:E, 6ta1:L, 6ta1:H, 6ta1:J, 6u5t:G, 6u5u:G, 2uv8:G, 2uv8:H, 2uv8:I, 2vkz:G, 2vkz:H, 2vkz:I
29 8ps2:G 2036 94 0.0789 0.0123 0.2660 6.7 3hmj:G, 3hmj:H, 3hmj:I, 8prv:G, 8prw:G, 8prw:J, 8prw:I, 8prw:H, 8prw:K, 8prw:L, 8ps1:G, 8ps9:G, 8psa:G, 8psf:G, 8psg:G, 8psj:G, 8psk:G, 8psl:G, 8psm:G, 8psp:G, 6ql5:I, 6ql5:G, 6ql5:H, 6ql5:L, 6ql5:J, 6ql5:K, 6ql6:G, 6ql6:H, 6ql6:I, 6ql6:J, 6ql6:K, 6ql6:L, 6ql9:G, 6ql9:H, 6ql9:I, 6ql9:J, 6ql9:K, 6ql9:L, 6ta1:G, 6ta1:C, 6ta1:E, 6ta1:L, 6ta1:H, 6ta1:J, 6u5t:G, 6u5u:G, 2uv8:G, 2uv8:H, 2uv8:I, 2vkz:G, 2vkz:H, 2vkz:I
30 7cpx:A 2262 116 0.1009 0.0141 0.2759 0.015 7cpx:B, 7cpy:A, 7cpy:B
31 6nej:B 346 156 0.1199 0.1098 0.2436 0.053 6neg:A, 6neg:B, 6neh:A, 6neh:B, 6nej:A
32 7bc4:B 2054 178 0.1041 0.0161 0.1854 0.21
33 8i4y:A 1687 82 0.0599 0.0113 0.2317 0.33 8i4y:B, 8i4z:A
34 6z55:A 358 67 0.0599 0.0531 0.2836 0.88 9ez3:A, 6ft7:A, 6ft7:B, 6fyp:A, 6fyr:A, 6khf:A, 3raw:A, 3raw:B, 6rct:A, 6rct:B, 2wu6:A, 2wu7:A, 6ytw:A, 6ytw:B, 6yty:A, 6yu1:a, 6yu1:c, 6z2v:A, 6z51:A, 6z52:A, 6z52:B, 6z53:A, 6z54:A, 6z55:B
35 4zpk:B 321 93 0.0883 0.0872 0.3011 1.3 8ck3:A, 8ck4:A, 8ck8:A, 6czw:A, 6d09:A, 6d0b:A, 6e3s:B, 6e3t:B, 6e3u:B, 3f1o:A, 4ghi:A, 4gs9:A, 3h7w:A, 3h82:A, 5tbm:A, 5ufp:A, 7w80:B, 6x21:A, 6x28:A, 6x2h:A, 6x37:A, 6x3d:A, 4xt2:C, 4zqd:B
36 4zlf:A 785 60 0.0568 0.0229 0.3000 1.8 4zlg:A, 4zli:A
37 4v58:G 2060 182 0.1073 0.0165 0.1868 6.3 4v58:H, 4v58:I, 4v58:J, 4v58:K, 4v58:L, 4v59:G, 4v59:H, 4v59:I, 4v59:J, 4v59:K, 4v59:L
38 5ve8:B 1030 28 0.0379 0.0117 0.4286 7.4 5ve8:A, 5w0v:A, 5w0v:B
39 6i71:A 353 71 0.0599 0.0538 0.2676 7.8 6i71:B, 6i72:A, 6i72:B, 6i73:A, 6i73:B, 6yjw:A, 6yjw:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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