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BioLiP
>protein
MNEKSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYV
QGSLHTRKWHTNDQPKQITEIILSYNKGDLIFLD

The query sequence (length=114) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ulp:C 116 116 0.9912 0.9741 0.9741 5.08e-78 3ulp:A, 3ulp:B, 3ulp:D
2 1eqq:B 120 102 0.3509 0.3333 0.3922 7.67e-26 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
3 6rup:A 111 113 0.3772 0.3874 0.3805 1.05e-22 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
4 6irq:C 104 110 0.3596 0.3942 0.3727 1.93e-22 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
5 8uzt:B 100 82 0.3070 0.3500 0.4268 8.24e-20
6 5odp:G 100 83 0.2544 0.2900 0.3494 1.07e-14 5odp:A
7 5odn:D 106 90 0.2719 0.2925 0.3444 2.24e-14 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
8 7dep:B 102 85 0.2281 0.2549 0.3059 2.16e-08
9 8gw5:A 99 98 0.2456 0.2828 0.2857 7.00e-08 7ym1:A
10 3vdy:A 101 97 0.2281 0.2574 0.2680 1.35e-07 3vdy:B
11 6bhx:C 102 93 0.2456 0.2745 0.3011 1.47e-07 6bhx:A, 6bhx:B
12 2vw9:A 108 84 0.1842 0.1944 0.2500 1.74e-05 2vw9:B
13 3udg:C 214 84 0.2193 0.1168 0.2976 7.50e-04 3udg:B, 3udg:A
14 3udg:C 214 94 0.1842 0.0981 0.2234 0.009 3udg:B, 3udg:A
15 6s48:A 235 40 0.1140 0.0553 0.3250 0.19 6g3b:A, 6g3b:B, 6s48:B, 6s58:D
16 6rm3:SD0 210 52 0.1404 0.0762 0.3077 2.6
17 6bwy:B 346 29 0.0877 0.0289 0.3448 3.0 6bwy:A, 6bwy:G, 6bwy:E, 1qzg:A, 1qzg:B, 1qzh:A, 1qzh:B, 1qzh:F, 1qzh:C, 1qzh:D, 1qzh:E
18 1f9w:A 300 62 0.1667 0.0633 0.3065 3.2 1f9w:B
19 6k0b:C 231 54 0.1579 0.0779 0.3333 3.7 6k0a:D, 6k0b:D
20 4etp:A 379 65 0.1667 0.0501 0.2923 3.8 1f9t:A, 1f9u:A, 1f9v:A, 3kar:A
21 9c9y:A 612 71 0.1404 0.0261 0.2254 4.7 9ca0:A, 9ca1:A
22 7cuh:A 305 50 0.1316 0.0492 0.3000 8.6 4hid:A, 4hik:A, 4him:A, 4hio:A, 4hj5:A, 4hj7:A, 4hj8:A, 4hj9:A, 4hja:A, 5usb:A, 5usn:A, 5uso:A
23 8xku:B 845 56 0.1491 0.0201 0.3036 8.9 8xkv:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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