Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MNEKSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVY
VQGSLHTRKWHTSQPKQITEIILSYNKGDLIFLD

The query sequence (length=114) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ulp:C 116 116 1.0000 0.9828 0.9828 2.22e-80 3ulp:A, 3ulp:B, 3ulp:D
2 1eqq:B 120 102 0.3509 0.3333 0.3922 5.21e-28 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
3 6irq:C 104 110 0.3596 0.3942 0.3727 7.44e-24 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
4 6rup:A 111 83 0.3070 0.3153 0.4217 3.96e-20 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
5 8uzt:B 100 112 0.3684 0.4200 0.3750 9.09e-20
6 5odp:G 100 84 0.2719 0.3100 0.3690 4.48e-16 5odp:A
7 5odn:D 106 88 0.2632 0.2830 0.3409 7.36e-14 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
8 8gw5:A 99 99 0.2456 0.2828 0.2828 2.08e-08 7ym1:A
9 6bhx:C 102 93 0.2368 0.2647 0.2903 2.91e-08 6bhx:A, 6bhx:B
10 7dep:B 102 86 0.2193 0.2451 0.2907 1.41e-07
11 3vdy:A 101 97 0.2193 0.2475 0.2577 4.37e-05 3vdy:B
12 2vw9:A 108 89 0.1930 0.2037 0.2472 2.09e-04 2vw9:B
13 3udg:C 214 84 0.2193 0.1168 0.2976 0.001 3udg:B, 3udg:A
14 3udg:C 214 93 0.1930 0.1028 0.2366 0.018 3udg:B, 3udg:A
15 3a5u:A 118 83 0.1842 0.1780 0.2530 0.005 3a5u:B
16 8ovj:SU 158 91 0.2193 0.1582 0.2747 1.2 8a3w:SU, 8a98:SU, 6az1:U, 8rxh:SU, 8rxx:SU, 5t2a:AE
17 6s48:A 235 29 0.0965 0.0468 0.3793 1.4 6g3b:A, 6g3b:B, 6s48:B, 6s58:D
18 1je5:B 182 77 0.1842 0.1154 0.2727 1.7
19 6c25:A 394 45 0.1579 0.0457 0.4000 1.8
20 3o9z:A 310 57 0.1579 0.0581 0.3158 2.1 3o9z:B, 3o9z:C, 3o9z:D, 3oa0:A, 3oa0:B, 3oa0:C, 3oa0:D
21 8xku:B 845 55 0.1579 0.0213 0.3273 2.3 8xkv:B
22 8r5o:E 912 51 0.1053 0.0132 0.2353 3.0 8ras:E
23 1f9w:A 300 66 0.1667 0.0633 0.2879 4.6 1f9w:B
24 4etp:A 379 66 0.1667 0.0501 0.2879 5.1 1f9t:A, 1f9u:A, 1f9v:A, 3kar:A
25 1g5c:A 169 43 0.1140 0.0769 0.3023 7.5 1g5c:B, 1g5c:C, 1g5c:D, 1g5c:E, 1g5c:F

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218