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BioLiP
>protein
MNEKSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVY
VQGSLHTRKWHTNNSQPKQITEIILSYNKGDLIFLD

The query sequence (length=116) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ulp:C 116 116 1.0000 1.0000 1.0000 8.71e-84 3ulp:A, 3ulp:B, 3ulp:D
2 1eqq:B 120 102 0.3448 0.3333 0.3922 2.92e-29 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
3 6rup:A 111 114 0.3707 0.3874 0.3772 2.62e-22 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
4 6irq:C 104 112 0.3534 0.3942 0.3661 5.18e-22 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
5 8uzt:B 100 83 0.3017 0.3500 0.4217 1.20e-19
6 5odp:G 100 84 0.2672 0.3100 0.3690 5.57e-16 5odp:A
7 5odn:D 106 100 0.2759 0.3019 0.3200 5.44e-15 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
8 6bhx:C 102 98 0.2500 0.2843 0.2959 8.76e-09 6bhx:A, 6bhx:B
9 8gw5:A 99 99 0.2414 0.2828 0.2828 1.45e-08 7ym1:A
10 7dep:B 102 86 0.2155 0.2451 0.2907 2.11e-07
11 3vdy:A 101 88 0.2069 0.2376 0.2727 1.21e-05 3vdy:B
12 2vw9:A 108 89 0.1897 0.2037 0.2472 2.24e-04 2vw9:B
13 3udg:C 214 84 0.2155 0.1168 0.2976 0.001 3udg:B, 3udg:A
14 3udg:C 214 91 0.1897 0.1028 0.2418 0.033 3udg:B, 3udg:A
15 3a5u:A 118 96 0.1983 0.1949 0.2396 0.002 3a5u:B
16 6s48:A 235 29 0.0948 0.0468 0.3793 1.4 6g3b:A, 6g3b:B, 6s48:B, 6s58:D
17 6c25:A 394 45 0.1552 0.0457 0.4000 1.7
18 8r5o:E 912 51 0.1034 0.0132 0.2353 3.2 8ras:E
19 1je5:B 182 76 0.1810 0.1154 0.2763 3.2
20 1iru:D 243 62 0.1293 0.0617 0.2419 3.6 8bzl:Q, 8bzl:C, 1iru:R
21 8ovj:SU 158 66 0.1638 0.1203 0.2879 5.1 8a3w:SU, 8a98:SU, 6az1:U, 8rxh:SU, 8rxx:SU, 5t2a:AE
22 1f9w:A 300 66 0.1638 0.0633 0.2879 5.4 1f9w:B
23 4etp:A 379 66 0.1638 0.0501 0.2879 5.8 1f9t:A, 1f9u:A, 1f9v:A, 3kar:A
24 6g21:A 504 64 0.1207 0.0278 0.2188 6.5 6g21:B
25 1g5c:A 169 43 0.1121 0.0769 0.3023 7.2 1g5c:B, 1g5c:C, 1g5c:D, 1g5c:E, 1g5c:F
26 4yds:A 226 54 0.1293 0.0664 0.2778 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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