Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNEKSLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRRVYVQ
GSLHTRKWHTNSQPKQITEIILSYNKGDLIFLD

The query sequence (length=113) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ulp:C 116 116 1.0000 0.9741 0.9741 1.04e-77 3ulp:A, 3ulp:B, 3ulp:D
2 1eqq:B 120 102 0.3540 0.3333 0.3922 2.51e-25 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
3 6irq:C 104 109 0.3717 0.4038 0.3853 7.16e-23 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
4 6rup:A 111 113 0.3805 0.3874 0.3805 6.86e-21 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
5 8uzt:B 100 111 0.3717 0.4200 0.3784 6.13e-20
6 5odp:G 100 84 0.2743 0.3100 0.3690 2.83e-14 5odp:A
7 5odn:D 106 86 0.2655 0.2830 0.3488 3.42e-14 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
8 6bhx:C 102 92 0.2566 0.2843 0.3152 2.17e-08 6bhx:A, 6bhx:B
9 7dep:B 102 84 0.2212 0.2451 0.2976 7.24e-08
10 8gw5:A 99 98 0.2566 0.2929 0.2959 8.08e-08 7ym1:A
11 3vdy:A 101 96 0.2212 0.2475 0.2604 6.99e-06 3vdy:B
12 2vw9:A 108 94 0.2035 0.2130 0.2447 1.01e-04 2vw9:B
13 3udg:C 214 81 0.2124 0.1121 0.2963 0.001 3udg:B, 3udg:A
14 3udg:C 214 95 0.2035 0.1075 0.2421 0.018 3udg:B, 3udg:A
15 3a5u:A 118 95 0.1947 0.1864 0.2316 0.011 3a5u:B
16 6rm3:SD0 210 52 0.1416 0.0762 0.3077 2.1
17 6s48:A 235 27 0.0973 0.0468 0.4074 2.3 6g3b:A, 6g3b:B, 6s48:B, 6s58:D
18 1f9w:A 300 62 0.1504 0.0567 0.2742 2.6 1f9w:B
19 4etp:A 379 62 0.1504 0.0449 0.2742 3.7 1f9t:A, 1f9u:A, 1f9v:A, 3kar:A
20 7pu7:A 1070 36 0.1150 0.0121 0.3611 3.9 5lew:A
21 4gkr:B 307 62 0.1504 0.0554 0.2742 4.4 4gkr:A
22 4kyr:A 208 57 0.1239 0.0673 0.2456 4.8
23 7mjr:A 899 79 0.1858 0.0234 0.2658 5.5

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218