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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MNDVNRIRTDIINVAKTFGAEYSEKVLDEVFQVFGEQFADNSFMIRTSNKQPDKLGCYFRYHEEDESQLGLAWDIARKSG
LLSDQGRPVDQLIPEICETFPIMADGVDFDVKHGLAKIWQSIKGVVPVQDAFKLSLPASVTTHSDFLKNHHLDALYAFGI
DYHHSSVNLYFDTYHPKHHTSEYYKNLLQDLQFQPPSDELLELLTNNGEIALTFNFASPRIERLCFYLPFLNREAVPQNL
LNPLLKKYINEAPALVDNPGFILGWSFGPQGGKGTYTKVDVDYHGRTVPL

The query sequence (length=290) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5z43:A 292 290 1.0000 0.9932 1.0000 0.0 5z43:B, 5z44:A, 5z44:B, 5z45:A, 5z45:B, 5z46:A, 5z46:B
2 5ynv:B 313 290 0.5966 0.5527 0.5966 9.16e-126 5y72:A, 5y72:B, 5y7c:A, 5y7c:B, 5y84:A, 5y84:B, 5ynt:A, 5ynt:B, 5ynu:A, 5ynu:B, 5ynv:A, 5ynw:A, 5ynw:B
3 2xlq:A 316 303 0.2828 0.2595 0.2706 7.46e-22 2xm7:A
4 4ee7:A 290 280 0.2552 0.2552 0.2643 2.53e-19
5 7fhb:A 306 216 0.1828 0.1732 0.2454 1.74e-10 1zb6:A, 1zcw:A, 1zdw:A, 1zdy:A
6 3bry:A 389 100 0.0862 0.0643 0.2500 0.68 3bry:B
7 6gn6:F 428 61 0.0759 0.0514 0.3607 2.9 6gn6:A, 6gn6:C, 6gn6:E, 6gn6:D, 6gn6:B
8 2fco:A 154 36 0.0379 0.0714 0.3056 3.9 2fco:B
9 7aqc:R 558 58 0.0586 0.0305 0.2931 4.9 7aqd:R, 7as8:0, 7as9:0, 7asa:0, 7ope:0
10 8d1x:D 469 39 0.0414 0.0256 0.3077 5.1 8d1x:A, 8d1x:B, 8d1x:C, 8d1x:E, 8d1x:F
11 7dva:A 523 28 0.0379 0.0210 0.3929 5.1 7dva:B, 7dvb:A, 7dvb:B, 7dvb:C, 7dvb:D
12 5a7i:A 313 142 0.1103 0.1022 0.2254 7.5 5a7j:A, 5a7j:B, 4cml:A, 3mtc:A, 3n9v:A, 3n9v:B
13 7c4k:A 614 35 0.0483 0.0228 0.4000 7.7 7c4l:A, 7c4m:A, 7c4n:A
14 8pe3:A 386 43 0.0552 0.0415 0.3721 8.3 8pe3:B
15 7ns9:A 178 40 0.0483 0.0787 0.3500 8.9 7nsa:A, 7nsd:A, 7nsf:A, 7oa2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218