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BioLiP
>protein
MMYVKLISSDGHEFIVKREHALTSGTIKAMLNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMA
ANFLDC

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6gmn:K 87 87 1.0000 0.9885 0.9885 5.13e-59 3dcg:D, 3dcg:B, 6gmx:K
2 2jz3:C 96 96 0.9884 0.8854 0.8854 1.65e-56 9bju:K, 6gmn:B, 6gmx:B
3 1hv2:A 99 93 0.3953 0.3434 0.3656 2.84e-15
4 8zuh:B 137 86 0.3605 0.2263 0.3605 3.22e-05
5 6s87:D 365 58 0.1860 0.0438 0.2759 2.8
6 4v6w:AD 227 50 0.2209 0.0837 0.3800 6.9 6xu6:AD, 6xu7:AD, 6xu8:AD
7 1rj5:A 259 45 0.1512 0.0502 0.2889 8.9 1rj5:B, 1rj6:A, 1rj6:B
8 1j1t:A 228 27 0.1279 0.0482 0.4074 9.9 4q8k:A, 4q8l:A, 4q8l:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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