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BioLiP
>protein
MMTNLQKEFFKRLKIPAKEITFNDLDEILLNMGMILPFENLDIMAGTIKNISKNNLVEKLLIQKRGGLCYELNSLLYYFL
MDCGFQVYKVAGTVYDLYDNKWKPDDGHVIIILHHNKKDYVIDAGFASHLPLHPVPFSGEVISSQTGEYRIRKRTTQKGT
HILEMRKDEWKIGYAFTLDPIDEQKVNNIQKVIVEHKESPFNKGAITCKLTNYGHISLTNKNYTETFKGTKNKRPIESKD
YARILRESFGIT

The query sequence (length=252) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3lnb:A 252 252 1.0000 1.0000 1.0000 0.0
2 4dmo:A 253 252 0.5159 0.5138 0.5159 9.39e-92 4dmo:B
3 4b55:A 273 243 0.2540 0.2344 0.2634 7.52e-18 4c5p:A, 3ltw:A, 2vfc:A, 2vfc:B
4 1w6f:A 273 193 0.2222 0.2051 0.2902 4.97e-17 1w6f:B, 1w6f:C, 1w6f:D
5 2pfr:A 290 124 0.1349 0.1172 0.2742 5.35e-11 2pfr:B
6 8osv:A 248 214 0.1825 0.1855 0.2150 2.44e-09 8oom:A, 8osz:A
7 8k56:B 281 221 0.2103 0.1886 0.2398 3.51e-09 8k56:A
8 4nv7:B 270 93 0.0992 0.0926 0.2688 4.30e-06 4nv7:A
9 6vfr:A 428 54 0.0833 0.0491 0.3889 0.32 6vfr:B
10 2rsn:A 75 36 0.0476 0.1600 0.3333 2.2 3g7l:A
11 3q2v:A 532 43 0.0556 0.0263 0.3256 4.6 1edh:A, 1edh:B, 1ff5:B, 1ff5:A, 3lne:A, 3lnf:A, 3lnf:B, 3lng:A, 3lng:B, 3lnh:A, 3lnh:B, 3lni:A, 3lni:B, 1q1p:A, 3q2l:A, 3q2l:B, 3q2n:A, 3q2n:B, 3q2v:B, 4qd2:E, 4qd2:J, 3qrb:A, 3qrb:B, 2qvf:B
12 5ygq:A 341 62 0.0754 0.0557 0.3065 4.6 5ygq:B
13 6v4x:I 510 24 0.0397 0.0196 0.4167 5.4
14 4bts:AW 259 73 0.0913 0.0888 0.3151 5.4 4bts:BW, 4bts:CW, 4bts:DW, 5jpq:p, 4v5o:AW, 4v5o:BW
15 1zov:A 381 72 0.0913 0.0604 0.3194 6.4 1zov:B
16 4gx2:B 548 28 0.0516 0.0237 0.4643 7.2 4gvl:A, 4gvl:B, 4gvl:D, 4gvl:C, 4gx0:B, 4gx0:C, 4gx1:B, 4gx1:C, 4gx2:C, 4gx5:B, 4gx5:C
17 3mhs:A 455 28 0.0437 0.0242 0.3929 7.5 6aqr:A, 4fip:A, 4fip:E, 4fjc:A, 4fk5:A, 6t9l:K, 4w4u:A, 4wa6:A, 4zux:U, 4zux:Z, 4zux:e, 4zux:j
18 4wa6:D 415 28 0.0437 0.0265 0.3929 7.9 4w4u:D
19 4fjc:E 434 28 0.0437 0.0253 0.3929 8.6 3m99:A, 3mhh:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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