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BioLiP
>protein
MMTHEENELLCRVEGDAPMGRLMRRHWTPICLVEEVGEPDGTPVKARAFGEDLVVFRDSEGRVGVMDEYCPHRRASLVYG
RNEEGGLRCLYHGWKMDVDGNVLEMASEPDKVKHTAYPTQEWAGMVWAYMGPKETMPEFLPPAWAPTADTRVSIAKVLLP
CNWAQILEGAIDSAHSSSLHSSDMVPWLRPSTDKAPRMQVQRTGYGFRYAALRRPLSNAAENDYVRSTVFVAPATALIPP
NNLYNVANINVPMDDTNTAFYFIAWGHPSQTPETETWRKFLRQTVGVDLDQNYRPLRNEANKFWQDRNAMKAGNFTGITG
FPNQDVAMWLTMGPIADRTHDRLGASDLAIVEFRKQMLDAVKAFEQGAPAIGTGVEAATPTVCSFQAIVPKTTDWRTYDA
HYVWL

The query sequence (length=405) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7v28:B 425 423 1.0000 0.9529 0.9574 0.0 7fjl:A, 7fjl:B, 7fjl:C, 7fjl:D, 7fjl:E, 7fjl:F, 7v25:B, 7v25:A, 7v25:C, 7v25:D, 7v25:E, 7v25:F, 7v28:A, 7v28:C, 7v28:D, 7v28:E, 7v28:F
2 7fhr:A 437 429 0.3679 0.3410 0.3473 7.59e-68
3 6wn3:B 328 167 0.1136 0.1402 0.2754 1.92e-13 7szh:A, 7szh:B, 7szh:C, 6wn3:A, 6wn3:C, 6wnb:A, 6wnb:B, 6wnb:C
4 7sze:B 329 167 0.1111 0.1368 0.2695 1.23e-12 7sze:A, 7sze:C, 7szf:A, 7szf:B, 7szf:C, 7szg:A, 7szg:B, 7szg:C, 6wnc:A, 6wnc:B, 6wnc:C, 6wnd:A, 6wnd:B, 6wnd:C
5 3gkq:A 374 180 0.1284 0.1390 0.2889 4.65e-11 3gkq:B, 3gkq:C, 3gkq:D, 3gkq:E, 3gkq:F
6 2de6:B 390 194 0.1284 0.1333 0.2680 8.03e-11 7bug:A, 7bug:B, 7bug:C, 7bui:A, 7bui:B, 7bui:C, 2de5:A, 2de5:B, 2de5:C, 2de6:A, 2de6:C, 2de7:A, 2de7:B, 2de7:C, 6ll0:A, 6ll0:B, 6ll0:C, 6ll1:A, 6ll1:B, 6ll1:C, 6ll4:A, 6ll4:B, 6ll4:C, 6llf:A, 6llf:B, 6llf:C, 6llh:A, 6llh:B, 6llh:C, 6llk:A, 6llm:A, 4nb8:A, 4nb8:B, 4nb8:C, 4nb9:A, 4nb9:B, 4nb9:C, 4nba:A, 4nba:B, 4nba:C, 4nbb:A, 4nbb:B, 4nbb:C, 4nbc:A, 4nbc:B, 4nbc:C, 4nbd:A, 4nbd:B, 4nbd:C, 4nbe:A, 4nbe:B, 4nbe:C, 4nbf:A, 4nbf:B, 4nbf:C, 4nbg:A, 4nbg:B, 4nbg:C, 4nbh:A, 4nbh:B, 4nbh:C, 3vmg:A, 3vmg:B, 3vmg:C, 3vmh:A, 3vmh:B, 3vmh:C, 3vmi:A, 3vmi:B, 3vmi:C, 1ww9:A
7 7qwt:A 352 166 0.1037 0.1193 0.2530 4.95e-10 7qwt:B, 7qwt:C, 7qwt:D, 7qwt:E, 7qwt:F, 7qwt:G, 7qwt:H, 7qwt:I
8 6icn:A 344 261 0.1506 0.1773 0.2337 1.16e-09 6ick:A, 6ick:B, 6ick:C, 6icm:A, 6icm:B, 6icm:C, 6icn:B, 6icn:C, 6ico:A, 6ico:B, 6ico:C, 6icp:A, 6icp:B, 6icp:C, 6icq:A, 6icq:B, 6icq:C
9 3gob:A 342 175 0.1062 0.1257 0.2457 1.66e-09 3gb4:A, 3gb4:B, 3gb4:C, 3gke:A, 3gke:B, 3gl0:A, 3gl0:B, 3gl2:A, 3gl2:B, 3gob:B, 3gob:C, 3gte:A, 3gte:B, 3gte:C, 3gts:A, 3gts:B, 3gts:C, 6vsh:A, 6vsh:B
10 3gcf:A 367 176 0.1185 0.1308 0.2727 1.88e-09 3gcf:B, 3gcf:C, 3gcf:D, 3gcf:E, 3gcf:F, 3gcf:G, 3gcf:H, 3gcf:I, 3gcf:J, 3gcf:K, 3gcf:L, 3gcf:M, 3gcf:N, 3gcf:O
11 4qdc:A 369 116 0.0864 0.0949 0.3017 5.31e-09 4qdd:A, 4qdf:A
12 6y9c:A 365 176 0.0963 0.1068 0.2216 1.35e-08 6y8s:A, 6y9d:A, 6y9d:B, 6y9d:C, 6y9d:D, 6y9d:E, 6y9d:F, 6y9d:G, 6y9d:H, 6y9d:I, 6y9d:J, 6y9d:K, 6y9d:L, 6zgp:A, 6zgp:B, 6zgp:C, 6zgp:D, 6zgp:E, 6zgp:F, 6zgp:G, 6zgp:H, 6zgp:I, 6zgp:J, 6zgp:K, 6zgp:L
13 6y8j:A 343 177 0.0963 0.1137 0.2203 2.04e-08
14 4qdf:B 357 166 0.1062 0.1204 0.2590 1.80e-07
15 6vsh:C 320 161 0.0988 0.1250 0.2484 5.06e-07 3gke:C, 3gl0:C, 3gl2:C
16 6icl:A 338 120 0.0815 0.0976 0.2750 1.39e-06
17 2zyl:A 359 161 0.1062 0.1198 0.2671 4.95e-06 4qck:A
18 3gzx:A 440 248 0.1432 0.1318 0.2339 1.11e-05 3gzy:A
19 7q05:E 409 226 0.1210 0.1198 0.2168 1.50e-04 7q04:D, 7q04:E, 7q04:F, 7q05:D, 7q05:F, 7q06:D, 7q06:E, 7q06:F, 7vju:A, 7vju:C, 7vju:E
20 1wql:A 436 217 0.1136 0.1055 0.2120 2.64e-04
21 4qur:A 415 180 0.0988 0.0964 0.2222 2.80e-04 5hl4:A, 4qup:A, 4quq:A, 3vca:A, 3vcp:A
22 1uli:C 425 165 0.1012 0.0965 0.2485 5.34e-04 1uli:A, 1uli:E, 1ulj:A, 1ulj:C, 1ulj:E
23 7yls:B 436 58 0.0543 0.0505 0.3793 5.70e-04 8h2t:B, 8h2t:D, 8h2t:G
24 1z01:A 427 125 0.0765 0.0726 0.2480 0.001 1z01:B, 1z01:C, 1z01:D, 1z01:E, 1z01:F, 1z02:A, 1z02:B, 1z02:C, 1z02:D, 1z02:E, 1z02:F, 1z03:A, 1z03:B, 1z03:C, 1z03:D, 1z03:E, 1z03:F
25 5aeu:A 433 217 0.1259 0.1178 0.2350 0.001 5aeu:C, 5aeu:E, 5aeu:G, 5aew:A, 5aew:C, 5aew:E, 5aew:G, 5aew:I, 5aew:K, 5aew:M, 5aew:O, 5aew:Q, 5aew:S, 5aew:U, 5aew:W, 2xr8:A, 2xr8:C, 2xr8:E, 2xr8:G, 2xr8:I, 2xr8:K, 2xr8:M, 2xr8:O, 2xr8:Q, 2xr8:S, 2xr8:U, 2xr8:W, 2xrx:A, 2xrx:C, 2xrx:E, 2xrx:G, 2xrx:I, 2xrx:K, 2xrx:M, 2xrx:O, 2xrx:Q, 2xrx:S, 2xrx:U, 2xrx:W, 2xsh:A, 2xsh:C, 2xsh:E, 2xsh:G, 2xsh:I, 2xsh:K, 2xso:A, 2xso:C, 2xso:E, 2xso:G, 2xso:I, 2xso:K, 2xso:M, 2xso:O, 2xso:Q, 2xso:S, 2xso:U, 2xso:W, 2yfi:A, 2yfi:C, 2yfi:E, 2yfi:G, 2yfi:I, 2yfi:K, 2yfj:A, 2yfj:C, 2yfj:E, 2yfj:G, 2yfj:I, 2yfj:K, 2yfl:A, 2yfl:C, 2yfl:E, 2yfl:G, 2yfl:I, 2yfl:K
26 2bmo:A 437 111 0.0667 0.0618 0.2432 0.002 2bmq:A, 2bmr:A
27 3en1:A 424 140 0.0790 0.0755 0.2286 0.007 3eqq:A
28 5xbp:A 444 110 0.0642 0.0586 0.2364 0.010 5xbp:D, 5xbp:G
29 1eg9:A 447 112 0.0691 0.0626 0.2500 0.053 4hjl:A, 4hkv:A, 2hmj:A, 2hmk:A, 2hml:A, 2hmm:A, 2hmn:A, 2hmo:A, 4hm0:A, 4hm1:A, 4hm2:A, 4hm3:A, 4hm4:A, 4hm5:A, 4hm6:A, 4hm7:A, 4hm8:A, 1ndo:A, 1ndo:C, 1ndo:E, 1o7g:A, 1o7h:A, 1o7m:A, 1o7n:A, 1o7p:A, 1o7w:A, 1uuv:A, 1uuw:A
30 2ckf:E 433 215 0.1111 0.1039 0.2093 0.063 2ckf:C
31 2i7f:A 102 69 0.0494 0.1961 0.2899 0.29 2i7f:B
32 3n0q:A 402 117 0.0667 0.0672 0.2308 0.51
33 2gbw:A 449 186 0.0988 0.0891 0.2151 0.51 2ckf:A, 2gbw:C, 2gbw:E, 2gbx:A, 2gbx:C, 2gbx:E
34 1sjg:A 112 71 0.0469 0.1696 0.2676 1.5 4p1b:H, 4p1b:I, 4p1c:H, 4p1c:I, 2q3w:A, 1vm9:A
35 2b1x:A 441 99 0.0667 0.0612 0.2727 1.6 2b1x:C, 2b1x:E, 2b24:A, 2b24:C, 2b24:E
36 8jng:A 147 69 0.0444 0.1224 0.2609 1.8
37 4jf7:A 501 79 0.0543 0.0439 0.2785 3.4 4jf7:D, 4jf7:B, 4jf7:C, 1z4v:A, 1z4w:A, 1z4x:A, 1z4y:A, 1z4z:A, 1z50:A
38 7qx0:B 443 44 0.0370 0.0339 0.3409 7.5 7qx0:A, 7qx0:C, 7qx0:D, 7qx3:B, 7qx3:C, 7qx3:A, 7qx3:D
39 6xo2:A 294 51 0.0420 0.0578 0.3333 8.0 7mfj:AAA, 6pmu:A, 6pmu:B
40 6f0k:A 207 50 0.0370 0.0725 0.3000 8.9
41 3b95:B 225 30 0.0272 0.0489 0.3667 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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