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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MMRIVAADTGGAVLDETFEPIGLIATVAVLVEKPYRSAKEVMVKYANPYDYDLTGRQAIRDEVLLAIELARKVKPDVIHL
DSTLGGIELRKLDEPTIDALGISDKGKEVWKELSKDLQPLARKFWEETNIEIVAIGKSSVPVRIAEIYAGIYSAKWGIEN
VEKEGHLIIGLPRYMEVNIKDGKIIGRSLDPREGGLYGSAEVSVPEGVKWEIYPNPVARRFMIFEIFSK

The query sequence (length=229) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5chi:A 230 229 1.0000 0.9957 1.0000 1.43e-165 5chi:B, 5chi:C
2 4yor:A 227 227 0.7686 0.7753 0.7753 9.01e-133 4yor:B, 4yot:A, 4yot:B, 4yot:C, 4you:A, 4you:C, 4yov:A, 4yov:C, 4yov:E, 4yow:A, 4yow:C, 4yow:E, 4yox:A, 4yox:C, 4yox:E, 4yoy:A, 4yoy:C, 4yoy:E
3 4you:B 199 228 0.6812 0.7839 0.6842 1.77e-106
4 1mpy:A 307 85 0.1004 0.0749 0.2706 0.49 1mpy:B, 1mpy:C, 1mpy:D
5 7tom:A 498 47 0.0568 0.0261 0.2766 2.7 7tol:A
6 5msu:B 459 50 0.0655 0.0327 0.3000 4.3 5mso:A, 5msu:C, 5msu:A
7 3pps:A 564 68 0.0917 0.0372 0.3088 4.6 3pps:B, 3pps:C, 3pps:D
8 2ixl:C 197 46 0.0655 0.0761 0.3261 5.2 2ixl:A, 2ixl:B, 2ixl:D, 1nyw:A, 1nyw:B, 1nzc:A, 1nzc:B, 1nzc:C, 1nzc:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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