Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MMRIGELGKKADCLVQTVRFYESEGLLPEPARFRLYDEVHLQRLLFIRRCRAKDMTLDEIRQLLNLRDRPELGCGEVNAL
VDAHIAQVRTKMKELRALERELMDLRRSCDARTSRECGILNSLA

The query sequence (length=124) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5gpe:D 129 129 1.0000 0.9612 0.9612 5.83e-83 5gpe:A, 5gpe:B, 5gpe:C, 5gpe:E, 5gpe:F, 5gpe:G, 5gpe:H
2 6jni:A 145 126 0.5645 0.4828 0.5556 4.58e-44 6jgw:B, 6jgw:A, 6jgx:A, 6jgx:B, 6jni:B, 6jni:H, 6jni:C, 6jni:D, 6jni:E, 6jni:F, 6jni:G, 6jyw:A, 6jyw:B
3 4ua1:B 125 123 0.3548 0.3520 0.3577 1.30e-17 4ua1:A
4 4wlw:A 130 127 0.2823 0.2692 0.2756 1.87e-14 7c17:G, 7c17:H, 6ldi:G, 6ldi:H, 1q05:A, 1q05:B, 4wls:A, 4wls:B, 6xh7:G, 6xh7:H, 6xh8:G, 6xh8:H
5 5crl:B 119 123 0.3387 0.3529 0.3415 6.44e-13
6 1q08:A 94 86 0.2581 0.3404 0.3721 1.64e-09 1q08:B, 1q09:A, 1q0a:A, 1q0a:B
7 3d6y:A 277 105 0.2177 0.0975 0.2571 0.097 1bow:A, 7ckq:G, 7ckq:I, 3d6z:A, 3d70:A, 3d71:A, 1exi:A, 1exj:A, 3q1m:A, 3q2y:A, 3q3d:A, 3q5p:A, 3q5r:A, 3q5s:A, 1r8e:A
8 5d8c:B 128 51 0.1371 0.1328 0.3333 0.25 5d8c:A, 5e01:A, 5e01:B
9 3gp4:A 132 69 0.1532 0.1439 0.2754 0.30 3gp4:B
10 7tea:B 78 61 0.1532 0.2436 0.3115 0.42 7tea:E, 7tea:A, 7tea:C
11 4uvq:A 263 41 0.1210 0.0570 0.3659 1.1
12 7tec:A 72 52 0.1452 0.2500 0.3462 1.2
13 2zhg:A 121 27 0.0806 0.0826 0.3704 1.5 2zhh:A
14 7ajt:CM 360 24 0.1048 0.0361 0.5417 1.9 7aju:CM, 7d4i:RK, 7d5s:RK, 7d5t:RK, 7d63:RK, 6ke6:RK, 6lqp:RK, 6lqq:RK, 6lqr:RK, 6lqs:RK, 6lqt:RK, 6lqu:RK, 6lqv:RK, 7suk:SH, 5wlc:SH, 6zqa:CM, 6zqb:CM, 6zqc:CM, 6zqd:CM, 6zqe:CM, 6zqg:CM
15 8fth:A 1263 60 0.1532 0.0150 0.3167 2.0
16 5xbt:A 271 69 0.1694 0.0775 0.3043 2.1 5xbi:A, 5xbi:B, 5xbt:B, 5xql:A
17 2wop:A 554 37 0.1210 0.0271 0.4054 3.3 2wok:A
18 8idp:A 446 16 0.0806 0.0224 0.6250 5.5 8idp:C, 8idp:B, 8idp:D, 8idq:A, 8idq:B, 8idq:C, 8idq:D
19 1r8d:A 109 74 0.1613 0.1835 0.2703 8.9 1r8d:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218